kr-colab greatapes_sims issues

kr-colab / greatapes_sims

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exons table in union_recap_mut.py includes exons in the padded region

#19 mufernando opened 1 year ago
0
rerun stats for the real data (update pxpy branch overlap figure)

#18 mufernando closed 1 year ago
0
specifying more than one replicate per parameter combo will break things

#17 mufernando opened 2 years ago
0
fix the way you do recapitation

#16 mufernando closed 2 years ago
2
stats script should be aware of windowing during simulation step

#15 mufernando closed 3 years ago
0
review union and tskit stats

#14 mufernando closed 3 years ago
0
vectorized genomic elements

#13 mufernando closed 3 years ago
1
a

#12 mufernando closed 3 years ago
0
shifting coordinates in exon tsv

#11 mufernando closed 3 years ago
0
set simplification interval for high N sims

#10 mufernando closed 4 years ago
1
make SLiM check if any intermediate tree seq has been saved - and restart from there

#9 mufernando closed 4 years ago
3
handle the rescaling factor the same way stdpopsim does

#8 mufernando closed 4 years ago
11
change default args in overlay.py

#7 mufernando closed 3 years ago
0
reconciling rec map in hapmap with actual chr sizes

#6 mufernando closed 4 years ago
4
convertToSubstitution=T?

#5 mufernando closed 4 years ago
1
snakemake won't work for more than one param comb

#4 mufernando closed 4 years ago
1
ploidy being set as 1

#3 mufernando closed 4 years ago
2
stats are being calculated from all individuals in tree sequence

#2 mufernando closed 4 years ago
2
Don't remove msprime mutations in the recaptiation region

#1 petrelharp closed 4 years ago
3