kundajelab phantompeakqualtools issues

kundajelab / phantompeakqualtools

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

BSD 3-Clause "New" or "Revised" License

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issues

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single-end or paired-end

#24 rickbingpan opened 11 months ago
0
Use phantompeakqualtools in CUT&Tag?

#23 Doctoryang90 opened 11 months ago
1
Negative Strand length

#22 varamhcu opened 2 years ago
0
awk: line 2: function and never defined

#21 RRebo closed 2 years ago
1
Peak Calling - Error when calculating statistical thresholds

#20 mw-neuro opened 3 years ago
2
How to deal with the data that have Phantom Peak Quality Tag -2/-1

#19 KunFang93 opened 4 years ago
0
R spp_run.r

#18 JianwuPSC closed 4 years ago
0
install.packages("./spp_1.14.tar.gz") Error

#17 mcsimenc closed 4 years ago
2
unable to save narrowpeak data

#16 ghost opened 4 years ago
8
Unable to install spp_1.14.tar.gz - boost version minimum?

#15 jjv5 opened 5 years ago
2
added shebang line to run_spp.R

#14 leepc12 closed 5 years ago
0
run_spp, not tag.lwcc error

#13 KunFang93 closed 4 years ago
11
added library(caTools)

#12 russHyde closed 5 years ago
3
Use latest version of SPP. Don't create tagAlign files for BAMs, SPP can read them directly.

#11 rakarnik closed 6 years ago
1
Add to bioconda?

#10 karl616 closed 6 years ago
5
cannot find runmean function

#9 bioinfouser closed 4 years ago
8
Getting lots of compilation errors on install

#8 endrebak closed 6 years ago
8
Use phantompeakqualtools in RIP-seq or MeRIP-seq?

#7 yuqingren opened 6 years ago
0
need to load caTools

#6 mistrm82 opened 6 years ago
0
multiple datasets

#5 olechnwin opened 7 years ago
1
install.packages("./spp_1.14.tar.gz"), error.

#4 zhenyisong closed 7 years ago
2
another problem: Error: protect(): protection stack overflow

#3 crazyhottommy opened 7 years ago
12
phantompeakqual Error in names(cc) < names(otl) :attempt to set an attribute on NULL

#2 crazyhottommy opened 7 years ago
16
Adding flags to simulate SET from PET bams in lines 448-450 (run_spp.R)

#1 sitag opened 7 years ago
0