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laminlabs
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bionty-base
Access public biological ontologies.
https://bionty-base.lamin.ai
Apache License 2.0
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✨ Add bto to Tissue
#581
sunnyosun
closed
5 days ago
1
Current protein name field is too long
#580
sunnyosun
opened
2 weeks ago
0
👷 Deploy docs to cloudflare
#579
falexwolf
closed
1 month ago
2
✨ New ontology: Gene-ensembl-111/112
#578
Zethson
closed
1 month ago
3
✨ New ontology: ExperimentalFactor-efo-3.63
#577
Zethson
closed
1 month ago
2
✨ New ontology: CellType-cl-2024-02-13
#576
Zethson
closed
1 month ago
3
:sparkles: New Ontology: Tissue-uberon-2024-02-20
#575
Zethson
closed
1 month ago
2
✨ New ontology: Organism-ensembl-release-111 and Organism-ensembl-release-112
#574
sunnyosun
closed
1 month ago
3
Update to ensembl `release-111` and `release-112` Gene
#573
sunnyosun
closed
1 month ago
0
:sparkles: New Ontology: Disease-mondo-2024-02-06
#572
Zethson
closed
1 month ago
3
:sparkles: New Ontology: Disease-DOID-2024-01-31
#571
Zethson
closed
1 month ago
2
:sparkles: New Ontology: Phenotype-hp-2024-03-06
#570
Zethson
closed
1 month ago
3
:sparkles: New Ontology: Phenotype-mp-2024-02-07
#569
Zethson
closed
1 month ago
3
:sparkles: New ontology: Phenotype-zp-2024-01-22
#568
Zethson
closed
1 month ago
2
:sparkles: New ontology: Pathway-pw-7.82
#567
Zethson
closed
1 month ago
2
:sparkles: New ontology: Drug-dron-2024-03-02
#566
Zethson
closed
1 month ago
2
🚚 Move out sources.yml
#565
sunnyosun
closed
1 month ago
3
Update BFXPipeline
#564
Zethson
closed
2 months ago
3
Update BFXPipeline
#563
Zethson
closed
2 months ago
0
password is deprecated
#562
falexwolf
closed
2 months ago
3
Use more general ICD website as source
#561
Zethson
closed
2 months ago
2
Pandas 3.0.0 fix
#560
Zethson
closed
2 months ago
3
Remove functions from __repr__
#559
Zethson
closed
2 months ago
2
Remove methods __repr__
#558
Zethson
closed
2 months ago
0
Future Warning for Pandas 3.0
#557
Zethson
closed
2 months ago
0
Source websites for ICD seem to be off
#556
Zethson
closed
2 months ago
0
Improve version resolution for ICD
#555
Zethson
opened
3 months ago
0
Add new ICD 10-CM
#554
Zethson
closed
3 months ago
3
🔇 Remove py version warning
#553
sunnyosun
closed
3 months ago
2
Switch to uv for CI
#552
Zethson
closed
3 months ago
3
Investigate SPARQL compatibility
#551
Zethson
closed
2 months ago
0
ICD-10 code list is incomplete
#550
sunnyosun
closed
3 months ago
1
🐛 Catch ClientError
#549
Koncopd
closed
3 months ago
2
Check existence of the object before fetching it on s3
#548
sunnyosun
closed
3 months ago
0
FAILED tests/entities/test_experimentalfactor.py::test_parse_efo_term - ValueError: undeclared synonym type: http://purl.obolibrary.org/obo/mondo#ABBREVIATION
#547
Zethson
opened
3 months ago
2
[DO NOT CLOSE] Guide to add new ontology
#546
sunnyosun
opened
3 months ago
0
Fix reset message
#545
Zethson
closed
3 months ago
3
Update ontology versions
#543
Zethson
closed
1 month ago
5
Misleading reset sources warning
#544
Zethson
closed
3 months ago
0
📝 Added validate example to docstring
#542
sunnyosun
closed
4 months ago
1
Update ontologies
#541
Zethson
closed
1 month ago
0
make ontology work with any kind of parental relationships
#540
jkobject
opened
4 months ago
6
🚚 Rename repo to `bionty-base`
#539
sunnyosun
closed
5 months ago
1
Add ICD ontology
#538
Zethson
closed
5 months ago
2
displaying children of Cell Ontology term
#537
indapa
opened
5 months ago
1
🚚 Rename `Bionty` to `PublicOntology` class
#536
sunnyosun
closed
5 months ago
2
:sparkles: Replace pre-commit with Ruff config
#535
Zethson
closed
6 months ago
2
Add mysql-connector-python requirement to EnsemblGene
#534
Zethson
closed
6 months ago
1
Genes include source in description
#533
Zethson
closed
6 months ago
1
🚚 Move bionty search & lookup guide to lamindb
#532
falexwolf
closed
7 months ago
1
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