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laminlabs
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bionty-base
Access public biological ontologies.
https://bionty-base.lamin.ai
Apache License 2.0
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3
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Add ICD 9, 10 and 11 from tuva
#531
Zethson
closed
4 months ago
1
✨ Enabled ID conversion via return_field
#530
sunnyosun
closed
7 months ago
2
Include `part_of` relationship for hsapdv
#529
sunnyosun
opened
7 months ago
0
🍱 Update EFO to version 3.57.0
#528
sunnyosun
closed
7 months ago
2
Add GENCODE to `Gene` source
#527
sunnyosun
closed
2 months ago
1
🍱 Update a few sources
#526
sunnyosun
closed
8 months ago
2
🚚 Relocate bionty.lock to versionsdir
#525
sunnyosun
closed
8 months ago
1
🔧 Using env variables for versionsdir
#524
sunnyosun
closed
8 months ago
1
🎨 Enable set versionsdir
#523
sunnyosun
closed
8 months ago
0
📝 Streamline extend guide
#522
falexwolf
closed
8 months ago
0
✨ Add ncbitaxon, refactored organism
#521
sunnyosun
closed
8 months ago
2
🚸 Add a backward compat parser
#520
sunnyosun
closed
9 months ago
1
🚚 Rename `Species` to `Organism`
#519
sunnyosun
closed
9 months ago
2
🚸 Suggest user to reset sources
#518
sunnyosun
closed
9 months ago
1
:memo: Clarify definition in readme
#517
falexwolf
closed
9 months ago
2
:lipstick: Prettify changelog header
#516
falexwolf
closed
9 months ago
2
✨ Add `BioSample` entity
#515
sunnyosun
closed
10 months ago
1
🚚 Rename `convert_legacy_ids` to `map_legacy_ids`
#514
sunnyosun
closed
10 months ago
2
🍱 Cached legacy df for genes
#513
sunnyosun
closed
10 months ago
1
✨ Add convert_legacy_ids for ensembl genes
#512
sunnyosun
closed
10 months ago
2
🔇 Silence download bar for <5MB files
#511
sunnyosun
closed
10 months ago
2
✨ Add `Ethnicity` entity
#510
sunnyosun
closed
10 months ago
1
Add chebi to Drug
#509
sunnyosun
opened
10 months ago
0
✨ Add DevelopmentalStage ontologies
#508
sunnyosun
closed
10 months ago
1
Add NCBI Taxonomy to Species
#507
sunnyosun
closed
8 months ago
2
✨ Allow non-default bionty sources in LaminDB
#506
sunnyosun
closed
10 months ago
2
✨ Add pato to Phenotype
#505
sunnyosun
closed
10 months ago
2
💄 Transient download bar
#504
sunnyosun
closed
10 months ago
2
Improve recurring logging
#503
Zethson
opened
10 months ago
0
Add phecodes
#502
Zethson
closed
10 months ago
2
🎨 Added `mute` to `.standardize`
#501
sunnyosun
closed
10 months ago
2
:sparkles: Relating Bionty to other tools
#500
Zethson
closed
10 months ago
1
Add phecode
#499
Zethson
closed
10 months ago
0
🚑️ Fix version recognition in lamindb
#498
sunnyosun
closed
11 months ago
2
🚚 Rename `map_synonyms` to `standardize`
#497
sunnyosun
closed
11 months ago
2
🚑️ Updated inspect params
#496
sunnyosun
closed
11 months ago
1
:sparkles: Add md5 for normal URLs
#495
Zethson
closed
11 months ago
2
:sparkles: Use latest versions of tests & add updating sources
#494
Zethson
closed
11 months ago
1
💚 Fixed tests
#493
sunnyosun
closed
11 months ago
1
✨ Introduce validate
#491
sunnyosun
closed
11 months ago
2
📝 Fix docs
#490
falexwolf
closed
11 months ago
2
Rename nf-core pipelines
#489
Zethson
closed
11 months ago
1
✨ Added EnsemblGene class
#488
sunnyosun
closed
11 months ago
1
🍱 Added all ensembl species DBs
#487
sunnyosun
closed
11 months ago
2
Add back support for external DBs in Gene
#486
sunnyosun
opened
11 months ago
0
🍱 Update to ensembl-110
#485
sunnyosun
closed
11 months ago
1
Update BFXPipelines
#484
Zethson
closed
11 months ago
1
Add support for more gene and protein sets
#483
Zethson
opened
11 months ago
0
🚚 Rename lamin_logger to lamin_utils
#482
sunnyosun
closed
11 months ago
2
🍱 Include obsolete terms in .df
#481
sunnyosun
closed
11 months ago
0
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