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laminlabs
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bionty-base
Access public biological ontologies.
https://bionty-base.lamin.ai
Apache License 2.0
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๐ Staging 0.25
#475
sunnyosun
closed
1 year ago
2
๐ Rename Readout to ExperimentalFactor
#474
sunnyosun
closed
1 year ago
2
cell line filter too restrictive
#473
Zethson
closed
1 year ago
2
Fresh Bionty standalone installation misses lamindb_current_source.yaml
#472
Zethson
closed
1 year ago
2
Inconsistent formatting of functions in docs headers
#471
Zethson
closed
1 year ago
0
Map synonyms give different results for the same inputs
#470
Koncopd
closed
1 year ago
2
:sparkles: Add diff
#468
Zethson
closed
1 year ago
2
:sparkles: Use input prompt
#467
Zethson
closed
1 year ago
1
๐ธ Case insensitive search
#466
falexwolf
closed
1 year ago
1
๐ Build docs standalone again
#465
falexwolf
closed
1 year ago
2
:sparkles: Use _bt suffix instead of _bionty for Bionty objects in docs
#464
Zethson
closed
1 year ago
2
Implement proper prompt for source_reset
#463
Zethson
closed
1 year ago
0
Use suffix `bt` for bionty objects
#462
Zethson
closed
1 year ago
0
โฌ๏ธ No longer pinning lamin-logger
#461
sunnyosun
closed
1 year ago
1
๐๏ธ Replace children with parents, migrate assets to django instance
#460
sunnyosun
closed
1 year ago
2
๐จ Log=False to turn off logging in inspect
#459
sunnyosun
closed
1 year ago
1
Write up a check list for updating the source yaml
#458
Zethson
closed
1 year ago
0
๐ Fixed logging of inspect, added casing check
#457
sunnyosun
closed
1 year ago
1
:sparkles: Add more phenotype ontologies
#456
Zethson
closed
1 year ago
2
โจ Add case_sensitive to inspect and search
#455
sunnyosun
closed
1 year ago
2
Improve update ontologies WF
#454
Zethson
closed
1 year ago
1
Upgrading Readout to 3.53.0 will result in a loss of ontology terms
#453
Zethson
closed
3 months ago
1
:sparkles: Fetch latest ontology versions
#452
Zethson
closed
1 year ago
2
๐ Fix passing empty strings to map_synonyms
#451
sunnyosun
closed
1 year ago
1
๐งช More tests for handle sources
#450
sunnyosun
closed
1 year ago
2
๐ Fix coverage of unit tests
#449
sunnyosun
closed
1 year ago
2
๐จ Default to name field for map_synonyms
#448
sunnyosun
closed
1 year ago
1
๐ Update tuple name of search result
#447
sunnyosun
closed
1 year ago
1
๐ Change species to vertebrte for ensembl
#446
sunnyosun
closed
1 year ago
1
๐ฅ Remove `ontology_info` and `NormalizeColumns`
#445
sunnyosun
closed
1 year ago
1
๐ Rename `fuzzy_match` to `search`
#444
sunnyosun
closed
1 year ago
2
โป๏ธ Harmonize code for Gene, Protein, CellMarker
#443
sunnyosun
closed
1 year ago
2
๐ Move lookup to logger
#442
falexwolf
closed
1 year ago
1
๐งช Properly test ontology_to_df
#441
sunnyosun
closed
1 year ago
2
๐ฑ Drop id, version columns
#440
sunnyosun
closed
1 year ago
1
โฐ๏ธ Remove dead code
#439
sunnyosun
closed
1 year ago
2
๐ Rename `.todict()` to `.dict()`
#438
sunnyosun
closed
1 year ago
1
:sparkles: Add prettier available_sources output
#437
Zethson
closed
1 year ago
1
โป๏ธ Lookup refactor to return multiple records
#436
sunnyosun
closed
1 year ago
1
:sparkles: Renamed sources_local
#435
Zethson
closed
1 year ago
1
โป๏ธ New implementation of lookup
#434
sunnyosun
closed
1 year ago
1
Add fields
#433
Zethson
closed
1 year ago
2
โ New records found in the public sources.yaml, updated /home/zeth/.lamin/bionty/versions/sources.local.yaml!
#432
Zethson
closed
1 year ago
6
Add docstring to _match_all_sources
#431
Zethson
closed
1 year ago
0
:bug: Fix filtering & remove bioregistry & refactoring
#430
Zethson
closed
1 year ago
1
๐ Fixed index bug in fuzzy_match
#429
sunnyosun
closed
1 year ago
1
๐ Improved inspect logging
#428
sunnyosun
closed
1 year ago
2
KeyError for fuzzy_match
#427
Zethson
closed
1 year ago
2
fuzzy_match not in repr of Bionty
#426
Zethson
closed
1 year ago
0
Lookup case sensitivity
#425
Zethson
closed
1 year ago
5
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