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laminlabs
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bionty-base
Access public biological ontologies.
https://bionty-base.lamin.ai
Apache License 2.0
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3
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Check out sources.yaml for details.
#424
Zethson
closed
1 year ago
1
Prettify inspect output
#423
Zethson
closed
1 year ago
5
Add `.fields` to Bionty class
#422
Zethson
closed
1 year ago
0
prefix filtering broken?
#421
Zethson
closed
1 year ago
4
Improve docs headers
#420
Zethson
closed
1 year ago
2
β»οΈ Removed curate, updated inspect guide
#419
sunnyosun
closed
1 year ago
2
Standalone misses lamindb_current_sources.yaml
#418
Zethson
closed
1 year ago
3
π Fixed lamindb instance error and refactored source matching
#417
sunnyosun
closed
1 year ago
2
Use bioregistry to find latest versions of ontologies
#416
Zethson
closed
1 year ago
1
README does not show actual fancy functionality
#415
Zethson
closed
1 year ago
1
bt.display_available_sources() does not scale
#414
Zethson
closed
1 year ago
0
Remove bioregistry
#413
Zethson
closed
1 year ago
0
LaminDB instance warning triggered in standalone mode
#412
Zethson
closed
1 year ago
4
π₯ No longer checks compat
#411
sunnyosun
closed
1 year ago
2
π¨ Always regenerate `.current_sources.yaml` upon import
#410
sunnyosun
closed
1 year ago
2
π Fix LAMINDB_INSTANCE_LOADED on Windows
#409
Koncopd
closed
1 year ago
1
:white_check_mark: Fix notebook execution
#408
falexwolf
closed
1 year ago
1
π Renamed source path variables
#407
sunnyosun
closed
1 year ago
1
β Clean up dependencies
#406
falexwolf
closed
1 year ago
1
π¨ Removed environment variable for loaded lamindb instance
#405
sunnyosun
closed
1 year ago
1
π Move img folder to guide
#404
falexwolf
closed
1 year ago
1
π Re-organize docs
#403
falexwolf
closed
1 year ago
2
π Fix API ref
#402
sunnyosun
closed
1 year ago
2
π Renamed version to source everywhere possible
#401
sunnyosun
closed
1 year ago
2
π¨ Updated yaml para
#400
sunnyosun
closed
1 year ago
1
Harmonize names
#399
Zethson
closed
1 year ago
2
π Fixed readout parsing
#398
sunnyosun
closed
1 year ago
2
π§ͺ Add tests to versions file generation
#397
sunnyosun
closed
1 year ago
2
π¨ Use the same code to create and update local yaml
#396
sunnyosun
closed
1 year ago
2
Consistent naming of entity objects
#395
Zethson
closed
1 year ago
0
β»οΈ Changed yaml format to have species as keys, refactored versioning
#394
sunnyosun
closed
1 year ago
1
Make species first class supported (2/2)
#393
sunnyosun
closed
1 year ago
2
:sparkles: Add improved species support
#392
Zethson
closed
1 year ago
2
Add md5 utility script
#391
Zethson
closed
1 year ago
0
Gene symbols that have multiple ensembl ids
#390
sunnyosun
closed
1 year ago
0
βUpdate version URLsβ to run only when an actual upload is expected
#389
sunnyosun
closed
1 year ago
2
π· Remove nox venv
#388
falexwolf
closed
1 year ago
2
:sparkles: Add examples; Remove lookout
#387
Zethson
closed
1 year ago
2
Lamin upload fails due to missing s3fs
#386
Zethson
closed
1 year ago
6
π¨ Default to return df when displaying versions
#385
sunnyosun
closed
1 year ago
2
Add GO
#384
Zethson
closed
1 year ago
2
πΈ Delete an incomplete file on an exception in s3_bionty_assets
#383
Koncopd
closed
1 year ago
1
β Remove nbproject from production dependencies
#382
Koncopd
closed
1 year ago
1
π Added `Entity=Bionty` backward compatibility
#381
sunnyosun
closed
1 year ago
1
β¨ Implemented a first `fuzzy_match` method
#380
sunnyosun
closed
1 year ago
2
π Decrease refresh_per_second in the progress bar to10
#379
Koncopd
closed
1 year ago
2
TypeError: '<' not supported between instance of 'str' and 'float'
#378
sunnyosun
closed
1 year ago
0
β Removed unused dependencies
#377
sunnyosun
closed
1 year ago
2
β Replace upath and fsspec with botocore
#376
Koncopd
closed
1 year ago
2
β¨ Allow `map_synonyms` for every entity
#375
sunnyosun
closed
1 year ago
1
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