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laminlabs
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bionty-base
Access public biological ontologies.
https://bionty-base.lamin.ai
Apache License 2.0
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Implement fuzzy string matching for ontology names
#374
sunnyosun
closed
1 year ago
0
Human Cell Atlas Ontology
#373
sunnyosun
closed
1 year ago
3
✨ Include `synonyms`, `definition` columns in parquet
#372
sunnyosun
closed
1 year ago
2
Issue loading pathway v7.78
#371
sunnyosun
closed
1 year ago
1
🩹 Also include the index field in `BiontyField`
#370
sunnyosun
closed
1 year ago
2
💄 Prettified __repr__
#369
sunnyosun
closed
1 year ago
1
💄 Prettified `__repr__`
#368
sunnyosun
closed
1 year ago
2
Add public roadmap
#367
Zethson
closed
1 year ago
1
Remove unpolished docs
#366
Zethson
closed
1 year ago
0
🍱 Download parquet files from `s3://bionty-assets`
#365
sunnyosun
closed
1 year ago
4
A progress bar for `s3_bionty_assets`
#364
sunnyosun
closed
1 year ago
1
🍱 Added `children` column to ontology parquet files
#363
sunnyosun
closed
1 year ago
2
Add a `childrens` column to the ontology dataframe for direct ontology subclasses
#362
sunnyosun
closed
1 year ago
0
Manages parquet files using bionty-assets instance
#361
sunnyosun
closed
1 year ago
0
Consider removing `reference_id` from df and init
#360
Zethson
closed
1 year ago
1
:sparkles: Implement map_synonyms
#359
Zethson
closed
1 year ago
3
Add examples to major functions
#358
Zethson
closed
1 year ago
0
Implement map_synonyms
#357
Zethson
closed
1 year ago
0
🏗️ Add `inspect()`
#356
Zethson
closed
1 year ago
2
Fix DO metadata
#355
Zethson
closed
1 year ago
2
Implement inspect
#354
Zethson
closed
1 year ago
0
Implement BiontyField
#353
Zethson
closed
1 year ago
0
:sparkles: Add Drug entity
#352
Zethson
closed
1 year ago
0
Add Drug ontology (dron)
#351
sunnyosun
closed
1 year ago
0
Fix non-process safe code
#350
jlricon
closed
1 year ago
0
Rename Entity to Bionty
#349
Zethson
closed
1 year ago
0
Fix lowercase types
#348
jlricon
closed
1 year ago
1
:arrow_up: Remove lndb
#347
Zethson
closed
1 year ago
2
:art: Rename to internal UPath implementation and add s3 to ffspec
#346
Zethson
closed
1 year ago
2
Simplify Upath implementation
#345
Zethson
closed
1 year ago
0
:sparkles: Add Upath, remove lndb_storage
#344
Zethson
closed
1 year ago
2
Make species first class supported (1/2)
#343
Zethson
closed
1 year ago
1
:sparkles: Map with Iterable support
#342
Zethson
closed
1 year ago
3
:sparkles: Deprecate 'database' parameter and replace it with 'source'
#341
Zethson
closed
1 year ago
1
✨ Added synonyms for CellMarker
#340
sunnyosun
closed
1 year ago
2
:sparkles: Move s3_bionty_assets
#339
Zethson
closed
1 year ago
2
:sparkles: Improve lookup docs
#338
Zethson
closed
1 year ago
1
:sparkles: Add more flexible prefixes
#337
Zethson
closed
1 year ago
2
Improve print versions
#336
Zethson
closed
1 year ago
2
:sparkles: Remove lndb_storage
#335
Zethson
closed
1 year ago
1
Do we need both lndb & lndb-storage as dependencies?
#334
sunnyosun
closed
1 year ago
3
📌 No pinning of lndb-storage version
#333
sunnyosun
closed
1 year ago
1
🎨 Update lnschema-bionty
#332
sunnyosun
closed
1 year ago
2
Prefix not flexible enough
#331
Zethson
closed
1 year ago
0
Add GO ontology
#330
Zethson
closed
1 year ago
0
Fix pathway ontology
#329
Zethson
closed
1 year ago
0
Eliminate warnings!
#328
falexwolf
closed
1 year ago
1
Disease ontology contains gene names
#327
sunnyosun
closed
1 year ago
0
💥 Change `.df()`, .`lookup()` to methods, move `._entity` to private
#326
sunnyosun
closed
1 year ago
2
💚 Fix bionty-asset instance for file upload
#325
sunnyosun
closed
1 year ago
1
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