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laminlabs
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cellxgene-lamin
Access the cellxgene data using LaminDB.
https://docs.lamin.ai/cellxgene
Apache License 2.0
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📝 Consistently use slice for arrays
#93
Koncopd
closed
16 hours ago
1
📝 Edit cellxgene guide
#92
Koncopd
closed
1 day ago
1
📝 Reorganize and integrate tiledbsoma guide
#91
Koncopd
closed
2 days ago
13
Simplify code
#90
Zethson
closed
1 week ago
1
Ensure that all of ad.AnnData | str | Path are supported
#89
Zethson
opened
1 week ago
0
🐛 Fix source validation
#88
Zethson
closed
1 week ago
1
:bug: Fix CI
#87
Zethson
closed
1 week ago
1
Support cellxgene schema 5.1.1
#86
Zethson
opened
2 weeks ago
0
:sparkles: Specify 5.0.0 explicitly
#84
Zethson
closed
3 weeks ago
1
🍱 Re-curating cellxgene: Annotating with features values & mapping version families
#83
falexwolf
opened
1 month ago
4
💄 Prettify cellxgene guide & refactor CI setup
#82
falexwolf
closed
1 month ago
1
🐛Fix gene curation
#81
Zethson
closed
1 month ago
2
Consider fetching the cellxgene ontology versions from CZI ontology_info.json
#80
Zethson
opened
1 month ago
0
Not all by cellxgene used sources for schema 5.0.0 can be found
#79
Zethson
closed
1 month ago
0
✨ Manually save collection
#78
Zethson
closed
1 month ago
1
Add save collection
#77
Zethson
closed
1 month ago
1
✨ Revert to passing organism explicitly
#75
Zethson
closed
1 month ago
1
💚 Install bionty from github in CI
#74
sunnyosun
closed
1 month ago
1
💚 Fix ci
#73
sunnyosun
closed
1 month ago
0
Fix curate throwing an exception on instantiation
#72
Zethson
closed
1 month ago
6
Fix uncovered line
#71
Zethson
closed
1 month ago
1
👷 Refactor CI setup
#70
falexwolf
closed
1 month ago
1
Instantiating Curate should not throw an exception
#69
falexwolf
closed
1 month ago
0
📝 Prettify `cellxgene-curate` guide
#68
falexwolf
closed
1 month ago
1
Speed up curate guide
#67
falexwolf
closed
1 month ago
2
Uncovered line
#66
falexwolf
closed
1 month ago
0
Update pinned lamindb to 0.74.2
#65
Zethson
closed
1 month ago
1
🚚 Rename Annotate to Curate
#64
falexwolf
closed
1 month ago
1
📝 Rename backed to open in guides
#63
Koncopd
closed
1 month ago
0
📝 Use backed to open census
#62
Koncopd
closed
1 month ago
1
✨ Register 2024-07-01-LTS
#61
sunnyosun
closed
1 month ago
1
📝 Use tiledbsoma instead of census to query data
#60
Koncopd
closed
2 months ago
1
🐛 Fix docs build
#59
Koncopd
closed
2 months ago
1
💚 Remaining fix
#58
falexwolf
closed
2 months ago
0
♻️ Add a query with types
#57
falexwolf
closed
2 months ago
1
📝 Prettier query in cellxgene notebook
#56
falexwolf
closed
2 months ago
1
:sparkles: Fix passing organism
#55
Zethson
closed
3 months ago
1
♻️ Fixes for lamindb 0.72
#54
falexwolf
closed
3 months ago
1
👷 Use uv
#53
sunnyosun
closed
4 months ago
1
💚 Fix data arg
#52
sunnyosun
closed
4 months ago
1
♻️ Simplify guide
#51
falexwolf
closed
4 months ago
1
:sparkles: Pinned ontologies schema
#50
Zethson
closed
4 months ago
1
:sparkles: Compare installed and expected cellxgene-schema versions
#49
Zethson
closed
5 months ago
1
cellxgene-schema validate is not validating successfully
#48
Zethson
closed
1 month ago
1
:sparkles: Pin lamindb 0.69.5
#47
Zethson
closed
5 months ago
1
⬆️ Update Annotate
#46
sunnyosun
closed
5 months ago
0
:art: Run census & annotate in parallel
#45
Zethson
closed
5 months ago
1
👷 Fix CI to run the census and annotate in parallel
#44
sunnyosun
closed
5 months ago
3
🚚 Rename Validate to Annotate
#43
sunnyosun
closed
5 months ago
1
⬆️ Pin lamindb to 0.69.3
#42
Zethson
closed
5 months ago
0
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