lawremi rtracklayer issues

lawremi / rtracklayer

R interface to genome annotation files and the UCSC genome browser

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issues

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Hardcoded openssl version requirement conflicts with Mac Homebrew

#32 ScottNortonPhD opened 4 years ago
2
UCSC Rest migration

#31 sanchit-saini closed 3 years ago
1
export to bam error

#30 sklas closed 4 years ago
2
export.bw() fails on a GPos object but succeeds if converted by GRanges() first.

#29 charles-plessy closed 4 years ago
1
Bigbed io feature

#28 sanchit-saini closed 4 years ago
5
getTable() produces a Bad Request error

#27 yige-luo opened 4 years ago
5
rtracklayer changes for BiocIO

#26 dvantwisk closed 4 years ago
5
Changes to rtracklayer for upcoming BiocIO package

#25 dvantwisk opened 4 years ago
2
GSoC 2020 : Track Hub feature doubts

#24 sanchit-saini closed 4 years ago
3
import.chain refuses chain file with spaces instead of tabs

#23 RoelKluin closed 1 year ago
1
WIP TrackHub feature

#22 sanchit-saini closed 4 years ago
16
Some GENCODE Genes IDs Not Faithfully Imported

#21 DarioS closed 5 years ago
3
New change to import.bw causes issue when importing specific regions?

#20 MalteThodberg closed 5 years ago
4
generating track hubs with bigBeds?

#19 tdhock closed 4 years ago
13
listData became an unnamed list

#18 yeroslaviz closed 5 years ago
3
export.bw consumes unusual amount of memory

#17 borauyar opened 5 years ago
9
Inconsistancy with export.wig depending on type of 'object'

#16 FelixErnst closed 5 years ago
1
readGFF() has problems when facing too long lines in imported gff file

#15 HajkD closed 3 years ago
7
import() leaves open file connections

#14 LTLA closed 5 years ago
6
Problem with makeTxDbFromGFF

#13 alfloleo opened 5 years ago
7
`rtracklayer` possible memory leakage

#12 cparsania closed 6 years ago
8
Backport fix: don't import path from Rsamtools

#11 scottgigante closed 6 years ago
2
import for BEDPE fails when "optional" columns do not exist

#10 LTLA closed 6 years ago
0
exporting twoBit

#9 lshep closed 6 years ago
10
new issue with UCSC imports

#8 chrisamiller closed 6 years ago
1
add import of narrowPeak file

#7 phaverty closed 6 years ago
4
import.bed

#6 Roleren closed 6 years ago
10
getTable() produces a Bad Request error

#5 hpages closed 6 years ago
13
error with TackNames and UCSC

#4 eandresleon closed 6 years ago
26
ucscSchemaDescription in release Bioc3.5

#3 lshep closed 7 years ago
2
Gateway Timeout Error while querying rheMac8 genome from UCSC

#2 dvantwisk closed 7 years ago
15
fix bug in reading chain files

#1 mlist closed 7 years ago
6