issues
search
lawremi
/
rtracklayer
R interface to genome annotation files and the UCSC genome browser
Other
28
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Failing on Bioc devel
#82
bschilder
opened
1 year ago
3
Add code to handle edge case while parsing JSON
#81
sanchit-saini
closed
1 year ago
0
track query (track = "GC Percent", table = "gc5Base") problem
#80
DanielEWeeks
closed
1 year ago
1
Explicitly use 'BiocGenerics::connection' to prevent warning message …
#79
svengato
closed
11 months ago
10
Test failure on Windows due to multibyte character issue
#78
lawremi
closed
1 year ago
2
`import.bb`: Error when `which=NULL`
#77
bschilder
opened
2 years ago
0
Unable to read remote bed.bgz
#76
bschilder
opened
2 years ago
7
ucscGenomes() returns NULL
#75
endeneon
opened
2 years ago
2
error import bw file
#74
bosmont
opened
2 years ago
3
`import.bw`: Unable to read remote files
#73
bschilder
opened
2 years ago
2
Convert an R data.frame to bed format with rtracklayer
#72
loukesio
closed
2 years ago
1
`restfulr::download.file` usage results in warning
#71
mjsteinbaugh
closed
2 years ago
7
LiftOver for genetic variants results in misplacement
#70
quattro
opened
2 years ago
1
import not working anymore
#69
komalsrathi
closed
2 years ago
1
Update size of url buffer from 1024 to 2024
#68
sanchit-saini
closed
2 years ago
0
Fix udcFileMayOpen and udcFilesCacheFiles to handle basename with query parameters
#67
sanchit-saini
closed
2 years ago
0
Is it possible to change the path for downloading the remote bw files?
#66
Codezy99
opened
2 years ago
2
`import.bw()` fails with long file names
#65
mtmorgan
closed
2 years ago
3
Lack of functionality to export narrowPeaks files
#64
PeteHaitch
opened
2 years ago
0
import.bw error
#63
tan5251
closed
2 years ago
9
Importing bigWigs from GEO: ` Error in .local(con, format, text, ...) : UCSC library operation failed `
#62
bschilder
opened
2 years ago
5
S.h removal from R 4.2
#61
hpages
opened
2 years ago
1
Fix bigbed to get correct result & update testcase
#60
sanchit-saini
closed
2 years ago
0
import.bb returning incorrect ranges & results as compared with kent tools bigBedToBed
#59
malcook
closed
2 years ago
4
export.gff3() adds trailing semicolons to the attributes column
#58
heavywatal
opened
2 years ago
0
Import bigwigs via http on Windows machine
#57
slaish
closed
6 months ago
2
failed to obtain hg38
#56
cmatKhan
closed
2 years ago
5
Issue with loading tracklayer
#55
wir963
opened
2 years ago
1
import() does not handle multiple tag attributes
#54
pcantalupo
opened
3 years ago
1
invalid class “GFF2File” object
#53
ericblanc20
opened
3 years ago
1
About a windows only error message
#52
Codezy99
opened
3 years ago
2
seqnames, ranges and strand cannot be extracted from gtf
#51
Shicheng-Guo
closed
3 years ago
1
“ucscCart” object: superclass "characterORconnection" not defined
#50
elaplant
closed
3 years ago
6
.parseUri() fix
#49
sanchit-saini
closed
3 years ago
1
Connection errors on Windows on R4.1
#48
sa-lee
closed
3 years ago
0
Windows checks fix
#47
sanchit-saini
closed
3 years ago
0
Fix Windows build
#46
sanchit-saini
closed
3 years ago
0
bugfix: get seqinfo from metadata first
#45
LiNk-NY
closed
1 year ago
2
Installation problem for R devel (4.1) on Windows
#44
ravolio
closed
3 years ago
2
Add support for URL redirection
#43
sanchit-saini
closed
3 years ago
0
import.bb failing for certain web-hosted bigBed
#42
vjcitn
closed
3 years ago
7
Example from section 5.3 in your vignette not working
#41
Krithika-Bhuvan
closed
3 years ago
8
UCSC Table query improvements
#40
sanchit-saini
closed
3 years ago
0
Trackhub windows patch
#39
sanchit-saini
closed
3 years ago
0
RELEASE_3_12 failures on Windows means that 1.50.0 is not propagating
#38
mtmorgan
opened
3 years ago
1
Add support for track parameter for ucscTableQuery
#37
sanchit-saini
closed
3 years ago
0
New Bioc devel changes breaking many packages -- is this intentional?
#36
lshep
closed
3 years ago
24
bug: browseGenome() fails to open UCSC genome browser without any arguments
#35
sanchit-saini
closed
11 months ago
0
BiocIO additional updates
#34
mtmorgan
closed
3 years ago
4
cannnot determine start/end columns when GFF attributes contain start and/or end
#33
nathanhaigh
opened
3 years ago
2
Previous
Next