lawremi rtracklayer issues

lawremi / rtracklayer

R interface to genome annotation files and the UCSC genome browser

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issues

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export.bw only write the last chromosome

#132 lldelisle opened 1 month ago
4
Issue installing rtracklater with CURLINFO_FILETIME_T

#131 thecatsmilk closed 1 month ago
2
Add checks for remaining MACROS to handle older libcurl

#130 sanchit-saini closed 2 months ago
0
support use of Rtwobitlib

#129 LiNk-NY closed 3 months ago
0
Importing local bigwig fails on some files in windows

#128 LinearParadox opened 3 months ago
0
specify minimal libcurl version as SystemRequirement

#127 jan-glx opened 3 months ago
1
Improved platform independence via curl_version_info()

#126 sanchit-saini closed 4 months ago
2
Improved platform independence via LSB for Ubuntu

#125 sanchit-saini closed 5 months ago
0
Fix CURLINFO_FILETIME_T not available in ubuntu 18.04

#124 js2264 opened 5 months ago
1
CURLINFO_FILETIME_T not available in ubuntu 18.04

#123 js2264 closed 4 months ago
13
library 'ssl' not found

#122 akhst7 opened 6 months ago
0
Remove login(), saveView() and restoreView()

#121 sanchit-saini closed 6 months ago
0
Add test cases to check if the UCSC scraping logic works properly

#120 sanchit-saini closed 6 months ago
0
Fix track(UCSCSession) to retrieve track by table Name

#119 sanchit-saini closed 6 months ago
0
Fix linking error on Windows/Rtools44

#118 hpages closed 6 months ago
1
Update build flags are generated by pkg-config

#117 sanchit-saini closed 5 months ago
0
Use curl::curl_unescape() instead of utils::URLdecode()

#116 hpages closed 7 months ago
2
Apply patch to fix compilation issue on ARM submitted by @kalibera

#115 sanchit-saini closed 6 months ago
0
Add pix=800 default to fix JS required issue

#114 sanchit-saini closed 8 months ago
1
UCSCSession objects breaking possibly because of some change on the UCSC side

#113 hpages closed 8 months ago
22
Migrate from RCurl to httr

#112 hpages closed 8 months ago
1
export file with a semi-colon at the end of each line

#111 hidtak opened 8 months ago
0
push -Wformat fix upstream Bioc

#110 LiNk-NY opened 9 months ago
1
Rewrite network stack in libcurl

#109 sanchit-saini closed 9 months ago
0
fix unknown track error in line665: rmsk --> RepeatMasker

#108 ferygood opened 9 months ago
0
Liftover convert hg38 to hg19

#107 JingjingBai2021 closed 10 months ago
1
Remove unused dead C code

#106 sanchit-saini closed 10 months ago
0
getTable() not working with hg38 UCSC session

#105 kkmarkel closed 12 months ago
2
restfulr can not process https

#104 qiyubio opened 1 year ago
3
Unknown track: refSeqComposite

#103 prc992 opened 1 year ago
2
Hello, I got an issue about Ucsc track, which is related to [#99 ](https://github.com/lawremi/rtracklayer/pull/99)

#102 jennyujin22 opened 1 year ago
1
libcurl function error when calling ucscGenomes()

#101 slsevilla opened 1 year ago
3
Change GRangesList to GRanges in browseGenome() to avoid error in normGenomeRange()

#100 sanchit-saini closed 1 year ago
0
Ucsc tracks

#99 sanchit-saini closed 1 year ago
0
ucscTables() does not work properly for hs1 genome

#98 hpages closed 1 year ago
6
Switch from HTTP to HTTPS for requests to *.ucsc.edu

#97 hpages closed 1 year ago
1
PR #79 breaks readGFF()

#96 hpages opened 1 year ago
0
Issues with browserSession()

#95 muqiaowhale closed 1 year ago
40
Fix '\item' tags with empty labels in .Rd files

#94 hpages closed 1 year ago
0
Update to handle UCSC genome names for hs1 & mpxvRivers

#93 sanchit-saini closed 1 year ago
2
Update url to prevent redirection for ucscTables

#92 sanchit-saini closed 1 year ago
0
Error in ucscTables("hg19", "Assembly") : Invalid genome :'hg19'

#91 sakuramodokich closed 1 year ago
1
Can't create a browser session for "hs1" or "mpxvRivers" genomes

#90 hpages closed 1 year ago
4
Update UCSC trackName selector

#89 sanchit-saini closed 1 year ago
3
trackNames() stopped working on a UCSCSession, possibly due to change on UCSC's side

#88 hpages closed 1 year ago
5
Request to Replace Sweave Vignettes with R Markdown

#87 sonali8434 opened 1 year ago
0
cannot load rtracklayer successfully

#86 lexie-lee opened 1 year ago
0
getTable ignores query ranges

#85 dorkylever closed 1 year ago
6
genome(session) <- "hs1" doesn't work

#84 hpages closed 1 year ago
2
Openssl is not available in netConnectHttps for importing remote BigWig files

#83 lcolladotor opened 1 year ago
7