lbcb-sci graphmap2 issues

lbcb-sci / graphmap2

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1

MIT License

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issues

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comparison with overlap alignment ground truth usearch -global?

#26 jianshu93 opened 3 months ago
0
IGV not finding sequence from bam file generated from a graphmap2 sam file

#25 Coahuila opened 1 year ago
0
Alignment failed

#24 dinovski opened 1 year ago
0
Use sse2neon.h shim for aarch64 support

#23 martin-g opened 2 years ago
4
`sse` should be used only on x86_64

#22 martin-g opened 2 years ago
1
Build fails on Linux ARM64

#21 martin-g opened 2 years ago
2
Header not contain PG line and duplicate SQ line

#20 manburst opened 3 years ago
0
Segmentation fault

#19 ksahlin opened 3 years ago
0
make installation error

#18 ksahlin opened 3 years ago
0
Graphmap2 index in shared memory

#17 lpryszcz opened 3 years ago
0
fail to install the graphmap2 v0.6.4

#16 sen1019san opened 4 years ago
6
Error building with g++ 9.3

#15 giesselmann opened 4 years ago
0
Sam file not create it killed

#14 aman21392 opened 4 years ago
1
Calling help return exit-code 1

#13 Darkless012 opened 4 years ago
0
clang error

#12 BrianaGross opened 4 years ago
7
Segmentation Fault on Yeast Transcriptome

#11 mjoppich opened 4 years ago
9
No reads are aligned?

#10 woodoo46 opened 4 years ago
14
Compile error?

#9 woodoo46 closed 4 years ago
4
Counting alignment operations error

#8 ksahlin closed 4 years ago
6
Graphmap2 can't align dRNAseq reads with U

#7 lpryszcz opened 5 years ago
1
Please tag a release

#6 dpryan79 closed 5 years ago
4
Memory up to 140GB!!!

#5 ydLiu-HIT opened 5 years ago
0
Segmentation fault

#4 ydLiu-HIT opened 5 years ago
8
Segmentation fault

#3 michieitel opened 5 years ago
6
Illegal instruction

#2 Tintest opened 5 years ago
1
ERROR: CIGAR and query sequence are of different length

#1 michieitel opened 5 years ago
15