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lemieuxl
/
pyGenClean
Automated genetic data clean up procedure in Python.
GNU General Public License v3.0
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MemoryError when reading TPED
#27
jgrundstad
closed
5 years ago
10
Error in post-install test run
#26
willmclaren
opened
6 years ago
3
TypeError in remove_heterozygous_haploid, v1.8.1
#25
jgrundstad
closed
7 years ago
3
output message for marker/sample missingness indicates the opposite of what's calculated
#24
jgrundstad
closed
8 years ago
1
pyGenClean ERROR duplicated_snps: ATGCATGC: unknown allele
#23
jgrundstad
opened
8 years ago
1
Update the documentation
#22
lemieuxl
closed
8 years ago
0
Decrease image's dpi
#21
lemieuxl
closed
8 years ago
0
Add a reason in the report for a subset
#20
lemieuxl
closed
8 years ago
0
Scree plot is too long
#19
lemieuxl
closed
8 years ago
2
Use of namedtuple for steps' results would be better
#18
lemieuxl
closed
8 years ago
0
Bug in main pipeline
#17
lemieuxl
closed
8 years ago
0
Genome file should be computed using autosomal markers only
#16
lemieuxl
closed
8 years ago
3
Merging reports when directory ends with / fails
#15
lemieuxl
closed
8 years ago
0
Using pyGenClean_find_outliers should update the automatic report
#14
lemieuxl
closed
8 years ago
0
Windows, LaTeX and paths
#13
lemieuxl
closed
8 years ago
0
Plate Bias - Wrong number of markers
#12
lemieuxl
closed
8 years ago
0
Check ethnicity error
#11
lemieuxl
closed
8 years ago
1
UnicodeDecodeError when unicode in paths
#10
lemieuxl
closed
8 years ago
2
Related Samples - Automatic report
#9
lemieuxl
closed
8 years ago
0
Gender Check - Automatic report
#8
lemieuxl
closed
8 years ago
0
Plate Bias - List of markers
#7
lemieuxl
closed
8 years ago
0
No scree plot in automatic report
#6
lemieuxl
closed
8 years ago
0
Pipeline fails if no duplicated samples found
#5
lemieuxl
closed
8 years ago
0
Pipeline fails if no duplicated markers found
#4
lemieuxl
closed
8 years ago
0
Add bafRegress to evaluate contamination of samples
#3
provosts
closed
8 years ago
0
compute PCA with EIGENSOFT (smartpca) on dataset only
#2
provosts
closed
8 years ago
1
Compute MDS only on dataset
#1
lemieuxl
closed
8 years ago
1