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levitsky
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pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
http://pyteomics.readthedocs.io
Apache License 2.0
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Addition of spectrum_utils backend
#43
levitsky
closed
2 years ago
1
mzTab conversion to dataframe
#42
eeko-kon
closed
3 years ago
2
Merge read optimizations
#41
mobiusklein
closed
3 years ago
1
mzML vs mzMLb vs mzXML
#40
sorenwacker
opened
3 years ago
9
OSError: [Errno 12] Cannot allocate memory
#39
hugokitano
closed
3 years ago
2
Improve mzMLb read performance with array cache
#38
mobiusklein
closed
3 years ago
8
Draft ProForma implementation
#37
mobiusklein
closed
3 years ago
5
Add USI PROXI backend for ProteomeExchange
#36
mobiusklein
closed
3 years ago
7
Draft mzmlb implementation
#35
mobiusklein
closed
3 years ago
6
Index additional tags for mzIdentML
#34
mobiusklein
closed
3 years ago
9
Pyteomics fails to parse mzId files with <Fragmentation> information
#33
jgriss
closed
3 years ago
3
Fix Unimod Compatibility With SQLAlchemy 1.4.X
#32
mobiusklein
closed
3 years ago
1
Unimod doesn't work with SQLAlchemy 1.4.2
#31
levitsky
closed
3 years ago
1
Handle missing mzTab-version header
#27
mobiusklein
closed
3 years ago
1
KeyError: 'mzTab-version' when loading PXD000001_mztab.txt
#26
PDiracDelta
closed
3 years ago
4
After using ms_data = mzxml.MzXML(filename) the file stays open on Windows.
#25
sorenwacker
closed
3 years ago
4
Fixed version parsing
#24
donnyyy777
closed
3 years ago
2
Add automatic generation of metadata accessors
#23
mobiusklein
closed
3 years ago
7
Parsing mztab 2.0 sections in `MzTab`
#22
annalefarova
closed
3 years ago
18
Parsing mztab 2.0
#21
annalefarova
closed
3 years ago
2
Substitute the five predefined XML entities with their characters in ID strings
#20
mobiusklein
closed
3 years ago
1
XML indexing fails when an XML entity encoded character appears in the identifier attribute
#19
mobiusklein
closed
3 years ago
0
Fix warning when overriding use_index
#17
paretje
closed
3 years ago
1
mgf.read ignores `use_index` if source is str (4.3.3)
#16
lars-kolbowski
closed
3 years ago
1
isoforms - partially undefined order of reported modified peptides
#15
lutzfischer
closed
3 years ago
6
Add pyteomics/version, remove VERSION file
#14
levitsky
closed
3 years ago
3
Add a __version__ method to pyteomics
#13
sugatoray
closed
3 years ago
4
Parse Annotated MGFs
#12
jmueller95
closed
3 years ago
7
A minimal Universal Spectrum Identifier parser and PROXI client
#11
mobiusklein
closed
3 years ago
3
Fix xpath, improve pepxml.roc_curve()
#10
alephreish
closed
3 years ago
3
GRAVY
#9
caetera
closed
4 years ago
0
Reading mztab failing
#8
ypriverol
closed
4 years ago
1
INSTALL and VERSION are missing in the sdist on PyPI
#7
sunpoet
closed
4 years ago
2
Add more aggressive name guessing for malformed but maybe recoverable non-standard data arrays
#6
mobiusklein
closed
4 years ago
0
Unrecoverable case with non-standard data array missing non-standard data array declaration in mzML
#5
mobiusklein
closed
4 years ago
1
Fall back to returning a value as a string if at first it looks like a param but fails to parse
#4
mobiusklein
closed
4 years ago
0
issues in mzTab when description of protein contains []
#3
ypriverol
closed
4 years ago
3
tandem is_decoy function
#2
tivdnbos
closed
4 years ago
2
Loading Byte Offset Indices From File-like Objects
#1
mobiusklein
closed
4 years ago
3
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