liguowang / cpgtools

Python package to analyze DNA methylation data
MIT License
39 stars 11 forks source link
bioinformatics dna epigenetics epigenomics methylation

Install CpGtools using pip

  1. (Optional) Create Virtual Environments (Note: venv is available in Python 3.3 and later. You can also use virtualenv)

    $ python3 -m venv my_env (will create a directory called my_env)

    $ source my_env/bin/activate

  2. Install CpGtools

    $ pip install cpgtools

    or

    $ pip install git+https://github.com/liguowang/cpgtools.git

  3. Upgrade

    $ pip install cpgtools --upgrade

  4. Uninstall

    pip -y uninstall cpgtools

Documentation

https://cpgtools.readthedocs.io/en/latest/