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lindenb
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jvarkit
Java utilities for Bioinformatics
https://jvarkit.readthedocs.io/
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errors running sortsamerefname, biostar154220
#103
PAMorin
opened
6 years ago
2
Two dictionaries are not the same
#102
ray1919
closed
6 years ago
3
bamstats04 bug?
#101
ray1919
closed
6 years ago
2
Feature request: Marking indel size in lowresbam2raster
#100
wdecoster
opened
6 years ago
0
Parsing error when double allele in alt
#99
jgarces02
closed
6 years ago
7
(*Not a bug*) msa2vcf - Projection of coordinates for a reference?
#98
LovellHAGSC
closed
6 years ago
4
Is it possible to run fixvcfmissinggenotypes in parallel?
#97
durwa004
opened
6 years ago
3
Error when making sam4weblogo
#96
nickschurch
closed
6 years ago
1
java.lang.ArrayIndexOutOfBoundsException: 145
#95
Babita004
closed
6 years ago
3
fixvcfmissinggenotypes filles in DP at wrong position
#94
toedling
closed
6 years ago
5
Can't compile on Ubuntu 16.04.3 LTS w/ Oracle Java 9.0.1+11
#93
jon-nowacki
closed
6 years ago
1
sam2tsv insufficient memory error
#92
mt1022
closed
6 years ago
6
test mail
#91
lindenb
closed
6 years ago
5
compiling jvarkit samjdk on Ubuntu 14.04 openjdk-8-jdk
#90
avilella
closed
6 years ago
2
issue running BLASTN2SNP
#89
dhwani2410
closed
6 years ago
6
bamstats04 changed default behaviour.... somehow
#88
apelin20
opened
6 years ago
2
GC overhead limit exceeded with jvarkit vcfrenamechr
#87
browngcm
closed
7 years ago
9
vcf2bam
#86
tcosta-f
closed
7 years ago
13
compilation error
#85
lianyh
closed
7 years ago
1
-T parameter not recognized in sortsamrefname & Biostar154220
#84
antmarge
closed
7 years ago
1
sortsamrefname stalling at end for hours
#83
antmarge
closed
7 years ago
5
Problems while installing vcffilterjdk
#82
muhammadsohailraza
closed
7 years ago
5
Wrong results when original reads contains soft clipped nucleotides
#81
chadisaad
opened
7 years ago
10
FindAllCoverageAtPosition works only when the file name comes from standard input
#80
ialbert
closed
7 years ago
2
VCFfilterJS does not remove variants
#79
thartwig
closed
5 years ago
2
no stats from bamstat04.jar
#78
bertgoldphd
closed
6 years ago
1
SAM4WebLogo bug? Some output sequence lengths are short by 1 character
#77
ashipde
opened
7 years ago
1
VcfFilterSO dispays warnings if the input vcf file do not contain both EFF and ANN annotations
#76
Oodnadatta
closed
7 years ago
11
Biostar103303 output
#75
lmanchon
closed
7 years ago
5
SamFixCigar and GraphMap issues
#74
Tintest
closed
7 years ago
4
User-defined reference for coordiantes in MsaToVcf?
#73
cbergman
closed
6 years ago
1
Modifying string length requirements in vcf2sql
#72
gilhornung
closed
7 years ago
1
Error when trying to run vcf2sql on the ExAC vcf file
#71
gilhornung
closed
7 years ago
1
PcrClipReads: reads with already soft clipped bases
#70
alborm
opened
7 years ago
0
vcf2hilbert
#69
SamMondal
closed
6 years ago
1
No bam to fix a sample in fixvcfmissinggenotypes.jar
#68
patidarr
closed
7 years ago
9
Request: Consider neighboring nucleotides in VCFPolyX
#67
tantrev
closed
8 years ago
2
Problems running bamstats05: ERROR jvarkit - null
#66
ECGarrett
closed
6 years ago
2
how to show unmapped reads for sam2tsv ?
#65
WinterLi1993
closed
8 years ago
1
what's the meaning cigar-op ?
#64
WinterLi1993
closed
8 years ago
3
how to get the number of mismatches per read with the help of sam2tsv ?
#63
WinterLi1993
closed
8 years ago
1
sam2tsv do not suggest bam input ?
#62
WinterLi1993
closed
8 years ago
2
sam2tsv bug error
#61
WinterLi1993
closed
8 years ago
4
bam2raster: genome coordinates shifted by 1 base
#60
jfx319
closed
8 years ago
2
Biostar78400.jar , Bug, regarding PU and PL values in RG tags
#59
muhammadsohailraza
closed
8 years ago
5
Biostar78400.jar , Error: "FlowCell id HS2000-450_507 defined twice in XML"
#58
muhammadsohailraza
closed
8 years ago
4
DpnII site, biostar86480.jar
#57
sunta3iouxos
closed
8 years ago
1
DpnII site
#56
sunta3iouxos
closed
8 years ago
0
Compilation segmentation fault
#55
slowkow
closed
8 years ago
2
bamstats05 error: no stats produced
#54
Setfelix
closed
8 years ago
2
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