lmb-freiburg Unet-Segmentation issues

lmb-freiburg / Unet-Segmentation

The U-Net Segmentation plugin for Fiji (ImageJ)

https://lmb.informatik.uni-freiburg.de/resources/opensource/unet

GNU General Public License v3.0

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issues

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Installation Roadblock

#96 aj94260 closed 1 year ago
1
Exporting the environment

#95 Hir320 opened 1 year ago
0
MacOs installation issue

#94 vittorione94 opened 1 year ago
1
CMakeLists.txt runs on Windows

#93 ThorstenFalk closed 1 year ago
0
caffe or caffe_unet issues

#92 phischer007 closed 1 year ago
7
Update to JHDF5 19.04.1

#91 ctrueden closed 1 year ago
1
client loop: send disconnect: broken pipe; SFTP Failure 4

#90 ledemay opened 2 years ago
1
Model/weight check failed

#89 dmuratli opened 2 years ago
0
caffe_unet not found

#88 Agggy opened 2 years ago
1
Writing a macro script to run the Finetune model

#87 zakaria-grid opened 2 years ago
0
Segmentation does not have good separation between multiple instances of cells

#86 MBronars opened 2 years ago
0
Finetuning does not 'train' ,aborts

#85 ssg5 opened 2 years ago
6
U-net installation

#84 ssg5 closed 2 years ago
6
CUDA 10.1 support

#83 Hir320 opened 2 years ago
3
output very weird

#82 Leo-o333 opened 2 years ago
5
How to change binary path if I am using EC2?

#81 Leo-o333 closed 2 years ago
2
CUDA 11 support

#80 BolekZapiec opened 3 years ago
3
Invalid Private Key, RSA

#79 MBronars opened 3 years ago
4
Use the weights available at https://lmb.informatik.uni-freiburg.de/resources/opensource/unet/ for Tensorflow 2 (Keras)

#78 maxclac opened 3 years ago
6
Tiling makes tens of thousands of images

#77 njhanne closed 3 years ago
3
Where to obtain test data?

#76 maxclac opened 3 years ago
0
Exception in thread "Thread-5" java.lang.IllegalArgumentException

#75 RuiyuRayWang closed 3 years ago
1
CUDA Installation difficulty

#74 madisonpb1 closed 3 years ago
10
The larger tile shape results lower speed in finetuning.

#73 dean09131 opened 3 years ago
1
Backend and Frontend on Mac

#72 MBronars closed 3 years ago
0
"caffe_unet was not found"

#71 wlynn53545354 opened 4 years ago
2
Connecting to Colab

#70 Nelson-Gon closed 4 years ago
2
CMake Error at CMakeLists.txt:42 (get_filename_component): get_filename_component called with incorrect number of arguments

#69 Betaglutamate closed 4 years ago
0
CPU only installation

#68 Nelson-Gon closed 4 years ago
1
Fiji macro for batch detection

#67 ayallavi opened 4 years ago
2
GCC version error for GPU installation

#66 rakesh9920 opened 4 years ago
4
Bash: caffe: command not found

#65 volkovwashere closed 4 years ago
4
Install and run Unet-Segmentation from Windows

#64 PaulineBlz closed 4 years ago
5
3D segmentation - min tile size in fiji

#63 ayallavi opened 4 years ago
5
Install backend from source on centos 7: undefied references to "cblas_"

#62 Joeman17 closed 4 years ago
2
Cannot select model folder

#61 volkovwashere closed 4 years ago
5
Normalization of pixel resolution

#60 sachahai closed 4 years ago
3
3D UNet error: blob size exceeds INT_MAX

#59 pr4deepr closed 4 years ago
10
Caffe installation help - please :)

#58 ealemany closed 4 years ago
8
The loss drops sharply to negative after 2/3 iterations and it never recovers

#57 collegeblock closed 4 years ago
1
multiple gpus_cannot access second gpu

#56 pr4deepr closed 4 years ago
2
custom commands backend server after ssh

#55 pr4deepr closed 4 years ago
8
caffe: error while loading shared libraries: libcudart.so.10.0: cannot open shared object file: No such file or directory

#54 ten1er closed 4 years ago
0
Macro commands of the Fiji plugin U-net

#53 ech3000 closed 4 years ago
1
"caffe_unet was not found" When accessing from Windows

#52 Vector2020 closed 4 years ago
2
caffe_unet not found

#51 ashley-williams closed 4 years ago
5
How can I train datasets like PASCAL VOC without fiji?

#50 JimHeo closed 5 years ago
4
hungarian_algorithm.cpp:84] Check failed: value >= 0 (-nan vs. 0) All matrix elements have to be non-negative.

#49 pilletb closed 4 years ago
10
java.lang.NoSuchMethodError

#48 JahnJ closed 5 years ago
2
Low loss but still getting poor segmentation

#47 MBronars closed 4 years ago
5