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pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
https://pyfastx.readthedocs.io
MIT License
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build: extend linux handling to any GNU platform
#83
pinotree
opened
4 weeks ago
0
How to read two fastq files simultaneously?
#82
yc-pro
opened
1 month ago
0
Segmentation Fault (Core dumped)
#81
casparbein
opened
2 months ago
0
Update README.rst
#80
thecaffiend
closed
3 months ago
0
Fetch function can't identify numpy int
#79
Yuan2yuan2yuan
opened
5 months ago
1
read.seq end with read.name when using pyfastx.Fastq in parsing long read FASTQ file
#78
QYanwei
opened
7 months ago
4
Sequence compostion
#77
kullrich
opened
8 months ago
2
Making invalid slices return an empty string instead of None
#76
fedarko
closed
7 months ago
1
Pyfastx.read.raw mangling reads
#75
BioWilko
closed
7 months ago
8
Bump zlib to v1.3
#74
kkchau
opened
11 months ago
1
Building/installing `pyfastx` from source is not possible due to zlib upgrade
#73
aroon-color
opened
11 months ago
0
Full Fasta info object without index building
#72
oschwengers
opened
1 year ago
1
Pointer being freed was not allocated error with `memory_index=True`
#71
mihaitodor
closed
1 year ago
2
Memory leak in Fastq read (probalby .quali)
#70
pfrstg
closed
1 year ago
2
How to get antisense sequence from any strings ?
#69
galaxy001
opened
1 year ago
1
performance update kseq
#68
telatin
closed
1 year ago
1
Segmentation fault using .composition on each contig
#67
nextgenusfs
opened
1 year ago
2
Cannot read input file with Chinese text in filename
#66
meisproject
closed
1 year ago
2
Unicode error reading large fastq with index?
#65
schorlton
closed
1 year ago
2
Support Python 3.11 on conda?
#64
schorlton
closed
1 year ago
3
SystemError: <class 'Fasta'> returned a result with an error set; on loading gzipped fasta
#63
jolo2486
opened
1 year ago
2
Unable to index gzipped fasta file by name: KeyError: 'chrY does not exist in fasta file'
#62
jolo2486
opened
1 year ago
1
Fastx parser vs Fasta/Fastq parsers
#61
schorlton
closed
1 year ago
2
Import Error
#60
jpizzollo
opened
1 year ago
3
[Feature Request] Get barcodes from Fastx function
#59
hotsoupisgood
opened
1 year ago
1
Support FASTA headers without whitespace
#58
kkchau
closed
10 months ago
2
Does current pyfastx support py2.7 version?
#57
Wan-Yifei
closed
1 year ago
2
UnicodeDecodeError: 'utf-8' codec can't decode bytes in position
#56
Muchmorepig
closed
1 year ago
4
src/index.c: fix typo caught by linting.
#55
emollier
closed
1 year ago
0
ValueError in test suite with pyfaidx 0.7.1
#54
emollier
closed
1 year ago
1
Upgrade actions to support building of Python 3.10 and 3.11 wheels
#53
corneliusroemer
closed
1 year ago
1
Add CodeQL workflow for GitHub code scanning
#52
lgtm-com[bot]
closed
1 year ago
0
Reset statements after failed fetches by id/name
#51
tsibley
closed
1 year ago
1
[BUG] Unable to get sequences after encountering `KeyError`
#50
joverlee521
closed
1 year ago
3
fasta records that don't have comments have comments attached to them after conversion to tabular format
#49
olgatsiouri1996
closed
1 year ago
2
[Feature Request] Read from stdin option
#48
jolespin
opened
2 years ago
3
Python 3.10 compatiblity
#47
jolespin
closed
1 year ago
2
Support xz-compressed files
#46
joverlee521
opened
2 years ago
2
Select index output folder
#45
MaWeffm
closed
1 year ago
2
Corrupt quality values
#44
mbassalbioinformatics
closed
1 year ago
2
Changes behavior of sequence objects so that they don't change their …
#43
sclamons
closed
1 year ago
2
streaming multiple fastq files at the same time?
#42
Irenexzwen
opened
2 years ago
1
some sequences are missing in pyfastx.Fasta object
#41
dawnmy
opened
2 years ago
4
SystemError with fa.fetch
#40
imk1
closed
2 years ago
1
Failure to properly parse ENCODE's GRCh38 reference
#39
sjgosai
closed
1 year ago
4
why it append "phred" behind read.name
#38
zhang570221322
opened
2 years ago
1
Iterating over sequences without comments results in comments from previous records
#37
telatin
closed
1 year ago
4
Unexpected behavior when a Sequence object is returned from a function
#36
EnzoAndree
closed
1 year ago
2
Add linux aarch64 wheel build support
#35
odidev
closed
1 year ago
6
Add support to release aarch64 wheels
#34
odidev
closed
1 year ago
1
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