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lpantano
/
DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
http://lpantano.github.io/DEGreport/
MIT License
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Connecting dots and lines in degPlotCluster()
#66
CroixJeremy2
opened
1 week ago
0
New genes that did not exist in dds object suddenly showed up after degPatterns
#65
sandray-imp
opened
5 months ago
1
Clarification with degMerge function
#64
Chengyao-Peng
opened
5 months ago
1
`scale` parameter is missing in `degPCA`
#63
bounlu
closed
2 months ago
1
degPatterns crashes because of stack overloading
#62
NastiaSkuba
closed
4 months ago
9
matching sequence of dend clusters to trajectory clusters
#61
zellerivo
closed
6 months ago
1
Error in DEGpatterns: could not find function "set"
#60
gowgowuk
closed
2 months ago
11
How does degPatterns() decide what height to use for cutting tree
#59
sang-15
closed
2 months ago
1
degCovariates does not shade by r value
#58
hwick
closed
2 months ago
5
issues with degPatterns not setting Time in Normalize
#57
kesner
closed
2 months ago
8
new features: dendogram as output and specifying number of desired clusters
#56
zellerivo
closed
10 months ago
6
Boxplot position
#55
Chunhuixu
closed
2 months ago
1
Fixed missing sticker image link
#54
Matt-Int
closed
1 year ago
0
`lasso2` dependency no longer on CRAN
#53
kennyworkman
closed
2 months ago
5
Regarding Clustering Based on Expression Pattern
#52
drives28
closed
2 months ago
1
Regarding Group # from degPatterns Output
#51
drives28
closed
2 months ago
2
Add batchx data
#50
idelvall
closed
2 years ago
0
Validate the clusters from degPatterns
#49
lgallegovillar
closed
2 months ago
2
Sort each cluster graph numerically
#48
bacas2
closed
2 years ago
1
Extracting Gene-Gene distance matrix from DegPatterns
#47
chk63
closed
2 months ago
3
Extract One Cluster Plot from degPlotCluster
#46
drives28
closed
2 months ago
3
Show Expression Changes from One Cluster
#45
drives28
closed
2 months ago
5
z-scores of gene abudance
#44
RubenRBakker
closed
2 months ago
10
lasso2 is an R4 only package
#43
alpapan
closed
5 months ago
1
Plot shows only one coldata group on x-axis
#42
elcega
closed
2 months ago
3
Extract the genes of each group pattern
#41
elcega
closed
2 months ago
3
Error in install.packages : ERROR: failed to lock directory
#40
venuraherath
closed
3 years ago
1
Error in rep("one_group", nrow(metadata)) : invalid 'times' argument
#39
elcega
closed
3 years ago
8
Point size fix
#38
vbarrera
closed
3 years ago
0
Problem with `summarise()`
#37
Bithorax
closed
2 months ago
4
`degCovariates`: breaking change in dplyr filter code
#36
mjsteinbaugh
opened
4 years ago
6
How to re-cluster in each group for DEGpattern?
#35
ShaowenJ
opened
4 years ago
0
Wrong clusters identification
#34
jgarces02
closed
4 years ago
2
Can we order the top N genes within degplot
#33
klai001
opened
4 years ago
5
degCovariates ERROR
#32
algilm
opened
4 years ago
1
How is variance explained calculated for degCovariates?
#31
Zepeng-Mu
closed
4 years ago
2
error message
#30
NextGenBioinformatics
opened
4 years ago
1
Add prefix to the title plot
#29
lpantano
opened
4 years ago
0
degPatterns results exists unsimilar pattern in a cluster
#28
etbuface
opened
5 years ago
1
degPatterns error
#27
wangmhan
closed
2 months ago
8
Incorrect reordering of TimeSeries in degPattern
#26
sum732
closed
5 years ago
2
bug in degPlotWide() (v. 1.18.1) only works if group="group"
#25
hexaflexa
closed
5 years ago
2
Fix for missing factor observations when summarizing in DEGpattern
#24
roryk
closed
5 years ago
0
degCheckFactors error
#23
maria-xi
opened
5 years ago
4
Fix typos in degPattern message.
#22
roryk
closed
5 years ago
4
Check class
#21
lpantano
closed
7 years ago
0
Adapt DEGSet to limma output
#20
lpantano
opened
7 years ago
0
Adapt plots to handle DEGSet class
#19
lpantano
closed
7 years ago
0
Add method to get data.frame table
#18
lpantano
closed
7 years ago
0
move NEWS to parent directory
#17
lpantano
closed
7 years ago
0
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