lpantano DEGreport issues

lpantano / DEGreport

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

http://lpantano.github.io/DEGreport/

MIT License

23 stars 16 forks source link

issues

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Connecting dots and lines in degPlotCluster()

#66 CroixJeremy2 opened 1 week ago
0
New genes that did not exist in dds object suddenly showed up after degPatterns

#65 sandray-imp opened 5 months ago
1
Clarification with degMerge function

#64 Chengyao-Peng opened 5 months ago
1
`scale` parameter is missing in `degPCA`

#63 bounlu closed 2 months ago
1
degPatterns crashes because of stack overloading

#62 NastiaSkuba closed 4 months ago
9
matching sequence of dend clusters to trajectory clusters

#61 zellerivo closed 6 months ago
1
Error in DEGpatterns: could not find function "set"

#60 gowgowuk closed 2 months ago
11
How does degPatterns() decide what height to use for cutting tree

#59 sang-15 closed 2 months ago
1
degCovariates does not shade by r value

#58 hwick closed 2 months ago
5
issues with degPatterns not setting Time in Normalize

#57 kesner closed 2 months ago
8
new features: dendogram as output and specifying number of desired clusters

#56 zellerivo closed 10 months ago
6
Boxplot position

#55 Chunhuixu closed 2 months ago
1
Fixed missing sticker image link

#54 Matt-Int closed 1 year ago
0
`lasso2` dependency no longer on CRAN

#53 kennyworkman closed 2 months ago
5
Regarding Clustering Based on Expression Pattern

#52 drives28 closed 2 months ago
1
Regarding Group # from degPatterns Output

#51 drives28 closed 2 months ago
2
Add batchx data

#50 idelvall closed 2 years ago
0
Validate the clusters from degPatterns

#49 lgallegovillar closed 2 months ago
2
Sort each cluster graph numerically

#48 bacas2 closed 2 years ago
1
Extracting Gene-Gene distance matrix from DegPatterns

#47 chk63 closed 2 months ago
3
Extract One Cluster Plot from degPlotCluster

#46 drives28 closed 2 months ago
3
Show Expression Changes from One Cluster

#45 drives28 closed 2 months ago
5
z-scores of gene abudance

#44 RubenRBakker closed 2 months ago
10
lasso2 is an R4 only package

#43 alpapan closed 5 months ago
1
Plot shows only one coldata group on x-axis

#42 elcega closed 2 months ago
3
Extract the genes of each group pattern

#41 elcega closed 2 months ago
3
Error in install.packages : ERROR: failed to lock directory

#40 venuraherath closed 3 years ago
1
Error in rep("one_group", nrow(metadata)) : invalid 'times' argument

#39 elcega closed 3 years ago
8
Point size fix

#38 vbarrera closed 3 years ago
0
Problem with `summarise()`

#37 Bithorax closed 2 months ago
4
`degCovariates`: breaking change in dplyr filter code

#36 mjsteinbaugh opened 4 years ago
6
How to re-cluster in each group for DEGpattern?

#35 ShaowenJ opened 4 years ago
0
Wrong clusters identification

#34 jgarces02 closed 4 years ago
2
Can we order the top N genes within degplot

#33 klai001 opened 4 years ago
5
degCovariates ERROR

#32 algilm opened 4 years ago
1
How is variance explained calculated for degCovariates?

#31 Zepeng-Mu closed 4 years ago
2
error message

#30 NextGenBioinformatics opened 4 years ago
1
Add prefix to the title plot

#29 lpantano opened 4 years ago
0
degPatterns results exists unsimilar pattern in a cluster

#28 etbuface opened 5 years ago
1
degPatterns error

#27 wangmhan closed 2 months ago
8
Incorrect reordering of TimeSeries in degPattern

#26 sum732 closed 5 years ago
2
bug in degPlotWide() (v. 1.18.1) only works if group="group"

#25 hexaflexa closed 5 years ago
2
Fix for missing factor observations when summarizing in DEGpattern

#24 roryk closed 5 years ago
0
degCheckFactors error

#23 maria-xi opened 5 years ago
4
Fix typos in degPattern message.

#22 roryk closed 5 years ago
4
Check class

#21 lpantano closed 7 years ago
0
Adapt DEGSet to limma output

#20 lpantano opened 7 years ago
0
Adapt plots to handle DEGSet class

#19 lpantano closed 7 years ago
0
Add method to get data.frame table

#18 lpantano closed 7 years ago
0
move NEWS to parent directory

#17 lpantano closed 7 years ago
0