issues
search
lskatz
/
fasten
:construction_worker: Fasten toolkit, for streaming operations on fastq files
MIT License
76
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
use subcommand instead of so many commands
#36
jianshu93
opened
3 months ago
1
fastq/fastq mergepe
#35
jianshu93
closed
3 months ago
1
it would be great to update your io code to allow reading and writing of compressed files
#34
sharkLoc
opened
7 months ago
0
Fasten mutate
#33
lskatz
closed
9 months ago
0
[suggestion] Document, eventually enforce, input format
#32
telatin
closed
9 months ago
1
Suggestion: a Makefile to automate tasks
#31
telatin
closed
9 months ago
0
Tests
#30
telatin
closed
9 months ago
1
fastq_mutate should always give -m mutations?
#29
telatin
closed
9 months ago
0
fasten_inspect: throw error on FASTA?
#28
telatin
closed
9 months ago
0
Feature: Add command to convert to interleaved format and back from interleaved format back to 2 FASTQ files.
#27
ghuls
closed
9 months ago
1
JOSS Paper citations
#26
bovee
closed
11 months ago
1
Clarify README summary
#25
bovee
closed
11 months ago
1
Update crates version in README
#24
bovee
closed
11 months ago
1
Consider adding documentation about `cargo install fasten`
#23
bovee
closed
11 months ago
1
Consider std::io::Stdin instead of File('/dev/stdin')
#22
bovee
opened
12 months ago
1
Update bibliography and paper markdown
#21
telatin
closed
1 year ago
1
JOSS Review
#20
telatin
closed
9 months ago
8
Docker fixes
#19
lskatz
closed
1 year ago
0
Joss editorial revision
#18
lskatz
closed
1 year ago
0
Joss
#17
lskatz
closed
1 year ago
0
Fasten repair
#16
lskatz
closed
1 year ago
0
Feature Request: handle seqlen != quallen
#15
chrisgulvik
closed
1 year ago
3
Fasten normalize
#14
lskatz
closed
1 year ago
0
typo in installation instruction
#13
telatin
closed
1 year ago
1
Add in --version
#10
lskatz
closed
2 years ago
0
Inline docs
#9
lskatz
closed
2 years ago
0
Unit testing
#8
lskatz
closed
2 years ago
0
Container
#7
lskatz
closed
2 years ago
0
fasten_trim reporting what it trimmed
#6
lskatz
opened
3 years ago
0
Concurrency
#5
lskatz
closed
3 years ago
0
add dockerfile
#4
jhphan
closed
3 years ago
0
docs on what fasten_validate does?
#3
kapsakcj
closed
2 years ago
2
numcpus does not work
#2
lskatz
opened
4 years ago
10
add progress meter
#1
lskatz
closed
3 years ago
1