luntergroup smcsmc issues

luntergroup / smcsmc

Demographic inference from whole genomes

GNU General Public License v3.0

11 stars 4 forks source link

issues

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feat: build smcsmc on circle

#75 Chris1221 closed 2 years ago
0
chore(master): release 1.1.0

#74 github-actions[bot] opened 2 years ago
0
feat: circle badge and release please action

#73 Chris1221 closed 2 years ago
0
feat: entry-point CLI, docker image, circle and release-please, functional tests

#72 Chris1221 closed 2 years ago
1
Incorporate `tskit` from master to devel.

#71 Chris1221 closed 5 years ago
0
Rebase and incorporate tskit conversion

#70 Chris1221 closed 4 years ago
0
v1.0.1

#69 Chris1221 closed 5 years ago
0
Problems with installation guides

#68 arredondos opened 5 years ago
5
Zlib linker issue conda build OSX

#67 Chris1221 closed 5 years ago
1
Prepare for public release

#66 Chris1221 closed 5 years ago
0
Lost a particle

#65 Chris1221 closed 5 years ago
0
Accounted for null pointer return from getLocalChild1

#64 Chris1221 closed 5 years ago
5
Added 0.5 to distance to ameliorate SCRM discretization issue

#63 Chris1221 closed 5 years ago
0
change kMaxArgs from 264 to 1024, close #61

#62 shajoezhu closed 7 years ago
0
scrm_input maximum number of arguments

#61 DonnaHenderson closed 7 years ago
3
rename submodule to smcsmcScrm

#60 shajoezhu closed 7 years ago
0
Remove branches

#59 shajoezhu closed 7 years ago
2
testing for single population, multiple population, multiple samples

#58 shajoezhu closed 7 years ago
0
update regression tests

#57 shajoezhu closed 7 years ago
0
mimic travis locally

#56 shajoezhu closed 7 years ago
0
use multiple thread to do unit test

#55 shajoezhu closed 7 years ago
0
update unittest segdata

#54 shajoezhu closed 8 years ago
1
Test/unittest

#53 shajoezhu closed 8 years ago
1
Test/unittest

#52 shajoezhu closed 8 years ago
0
Docs

#51 shajoezhu closed 8 years ago
0
Regression testing

#50 shajoezhu closed 5 years ago
0
only record the over all recombniation count and rate, not every epoch

#49 shajoezhu closed 8 years ago
1
use one out file

#48 shajoezhu closed 8 years ago
0
sphinx documentation

#47 shajoezhu closed 5 years ago
2
customised exception for error handling

#46 shajoezhu opened 8 years ago
2
resolving #43

#45 shajoezhu closed 8 years ago
0
test coverage remotely using https://coveralls.io/

#44 shajoezhu closed 5 years ago
1
test coverage locally

#43 shajoezhu closed 8 years ago
1
test coverage

#42 shajoezhu closed 5 years ago
0
Multi tiered focus

#41 DonnaHenderson closed 8 years ago
0
Merging new commits from scrm

#40 shajoezhu closed 8 years ago
0
Biased sampling

#39 DonnaHenderson closed 8 years ago
0
reduce c++11, in order for gcc4.6 to compile

#38 shajoezhu closed 8 years ago
0
remove moreTests branch https://github.com/luntergroup/smcsmc/tree/moreTests

#37 shajoezhu closed 5 years ago
1
use g++-4.6 to compile

#36 shajoezhu closed 8 years ago
0
Biased sampling

#35 DonnaHenderson closed 8 years ago
2
Biased sampling

#34 DonnaHenderson closed 8 years ago
0
Investigate caching

#33 shajoezhu closed 8 years ago
0
making new version of smcsmc, and making it compatibale with scrm, mo…

#32 shajoezhu closed 8 years ago
0
comparing scrm and smcsmcSCRM, recombination process diff, do not produce the same tree

#31 shajoezhu closed 8 years ago
11
requires too much of memory after EM

#30 shajoezhu closed 9 years ago
4
exceptions

#29 shajoezhu closed 9 years ago
2
assertion failed in scrm

#28 shajoezhu closed 9 years ago
1
resampling not working when data is included, similar error to #26

#27 shajoezhu closed 9 years ago
6
resampling not working

#26 shajoezhu closed 9 years ago
4