macarthur-lab gnomad_browser issues

macarthur-lab / gnomad_browser

gnomAD browser pre-ASHG 2018

MIT License

33 stars 16 forks source link

issues

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Speed improvements

#89 rowlandm closed 6 years ago
2
New import format of flask

#88 goja288 closed 3 years ago
2
No module named ext.script

#87 AKILLIMUSTAFA closed 3 years ago
1
Stop spam on report variant page

#86 mattsolo1 closed 5 years ago
0
Problematic use of Number=G in INFO records

#85 bioinformed closed 6 years ago
1
Inconsistency with AB_HIST_ALT and some multiallelic sites?

#84 koelling closed 6 years ago
4
Typo for gnomad.genomes.r2.0.2.sites.coding_only.chrX.vcf.bgz filesize in /downloads

#83 kristjaneerik closed 6 years ago
0
Filtered variants (e.g. AC0) missing from Viewing in Table track

#82 konradjk closed 6 years ago
2
Remove About and Terms from bottom of page

#81 konradjk closed 6 years ago
0
Non-cannonical transcript marker missing in new browser

#80 anneodonnell closed 6 years ago
1
Sort tissues in drop-down alphabetically? Currently sorted by expression.

#79 mattsolo1 closed 6 years ago
2
Sort transcripts by expression

#78 mattsolo1 closed 6 years ago
2
Clicking on transcript ID should filter variants + update annotations in table

#77 mattsolo1 closed 6 years ago
1
Gene coordinate plot: rotate numbers on mobile or reduce number of ticks

#76 mattsolo1 closed 6 years ago
1
Add legend to coverage plot

#75 mattsolo1 closed 6 years ago
1
"Gene not found" searches should have informative page rather than javascript error

#74 mattsolo1 closed 6 years ago
3
Can't sort by the Consequence or Flags column

#73 bw2 closed 6 years ago
1
Variant table search doesn't work in some cases

#72 bw2 closed 6 years ago
1
can't switch variant table from "gnomAD" to "gnomAD Exomes" or "gnomAD Genomes"

#71 bw2 closed 6 years ago
1
Add documentation to explain important parts of the gene page

#70 bw2 closed 6 years ago
2
Disable All and Missense + LoF buttons on TTN

#69 konradjk closed 6 years ago
2
First 2 bars overlap on region page

#68 konradjk closed 6 years ago
1
Add Hemizygote count to table for X

#67 konradjk closed 6 years ago
0
Add CSV export

#66 mattsolo1 closed 6 years ago
0
how to unzip 'gnomad.exomes.r2.0.0.sites.vcf.bgz' to VCF file

#65 zhangpeng1202 closed 5 years ago
1
Error Message when reporting a variant

#64 Dr-P33 closed 6 years ago
1
wrong rs number

#63 HuifangYAN closed 3 years ago
2
ClinVar links for multi-allelic or INDEL variants seem to be incorrect

#62 nabramovs closed 3 years ago
2
browser missing a variant that is in the vcf file

#61 shanyang88 closed 5 years ago
4
Update faq.html

#60 Sebastian-D closed 6 years ago
0
http:// (...)/gnomad.genomes.r2.0.1.sites.1.vcf.gz returns a XML doc 'The specified key does not exist'

#59 lindenb closed 7 years ago
2
Browser does not work because gnomad.js is missing

#58 nabramovs closed 6 years ago
2
"precalculate_metrics" function fails due to string values which cannot be converted to float

#57 nabramovs closed 6 years ago
1
caching - missing function get_gene_page_content

#56 ameynert closed 6 years ago
1
get_variants_from_sites_vcf crashes on sites with multiple alternate alleles

#55 ameynert closed 3 years ago
2
GnomAD TTN download issue

#54 efern219 closed 6 years ago
1
Flagging clonal expansion somatic variants in ExAC and gnomAD

#53 anneodonnell closed 6 years ago
1
Flagging genes with pseudogenes

#52 anneodonnell closed 6 years ago
1
Non-TCGA version

#51 gormleymp closed 5 years ago
4
abeaudetbcm

#50 abeaudetbcm closed 6 years ago
3
Multi-allelic records in VCFs do not distinguish when one is PASS

#49 pdl closed 7 years ago
1
In VCFs, consequences cannot be reliably mapped to alt alleles

#48 pdl closed 7 years ago
3
VCFs are only normalised in respect of one alt allele

#47 pdl closed 7 years ago
1
Fix parsing of multi-allelic variants for the AC_MALE and AC_FEMALE f…

#46 jpdna closed 3 years ago
6
some asserted rs numbers are wrong

#45 my-umd closed 7 years ago
1
(some) indels do not follow vcf standard

#44 my-umd closed 3 years ago
2
CNV file download

#43 jpdna closed 7 years ago
5
variants with AC=0, AN=0

#42 lindenb closed 7 years ago
1
Y chromosome Population Frequency table missing a column header

#41 tsneddon closed 6 years ago
1
DBsnp search not working

#40 Steven-N-Hart closed 7 years ago
2

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