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malariagen
/
pipelines
Pipelines for processing malaria parasite and mosquito genome sequence data.
MIT License
14
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13
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Update vector spec to reflect removal of calmd and usage of Picard SetNmMdAndUqTags tool
#17
gbggrant
closed
4 years ago
1
Updated readme and added in fix to picard location to resolve issue #15
#16
JonKeatley112
closed
4 years ago
0
Fix picards location issue for singulairty
#15
JonKeatley112
closed
4 years ago
0
Initial (GCP-specific) implementation of Short Read Alignment pipeline.
#14
gbggrant
closed
4 years ago
1
Add WDL validation CI
#13
alimanfoo
closed
2 years ago
1
Mosquito short read alignment pipeline - dockerfiles
#12
JonKeatley112
closed
4 years ago
8
Mosquito short read alignment pipeline - dockerfiles
#11
alimanfoo
closed
4 years ago
4
Update samtools usage
#10
gbggrant
closed
4 years ago
2
Add inputs and expected outputs for testing the vector short read alignment pipeline
#9
alimanfoo
closed
4 years ago
5
Updates specs README to link to specific version
#8
alimanfoo
closed
4 years ago
2
Short read aligment spec (vector)
#7
alimanfoo
closed
4 years ago
3
Mosquito short read alignment pipeline - test dataset
#6
alimanfoo
closed
4 years ago
8
Pipeline versioning strategy
#5
alimanfoo
closed
2 years ago
2
Add script to test whether people have access to Sanger Farm5
#3
tnguyensanger
closed
4 years ago
2
Mosquito short read alignment pipeline
#2
alimanfoo
closed
2 years ago
5
Repo file and folder structure
#1
alimanfoo
closed
2 years ago
3
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