marbl MetaCompass issues

marbl / MetaCompass

MetaCompass: Reference-guided Assembly of Metagenomes

https://github.com/marbl/MetaCompass/wiki

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Refseq path is nolonger available

#28 Jokendo-collab closed 4 months ago
0
Error in rule polish_contigs (ntHits?)

#27 lxsteiner opened 11 months ago
0
snakemake: error: argument **-T/--restart-times: expected one argument**

#26 esraagithub opened 2 years ago
3
Error when running MetaCompass

#25 bgmfddg opened 2 years ago
1
Could not open reference sequences file /refseq/markers/genome2markers.length

#24 zhan4429 opened 2 years ago
1
Error --pilon polish contigs

#23 GeonhoCho opened 3 years ago
1
Refseq-free installation?

#22 NBaileyNCL closed 2 years ago
1
Error in job reference_selection

#21 AKBode opened 3 years ago
2
snakemake: error: unrecognized arguments: -T

#20 TealFurnholm opened 3 years ago
5
Bowtie2 error

#19 mredrejo opened 3 years ago
0
Intallation problems (MacOS Catalina)

#18 mredrejo opened 3 years ago
0
one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode

#17 MarcelaHer opened 4 years ago
19
Error when running MetaCompass

#16 pbravakos opened 4 years ago
4
Using MetaCompass with GTDB instead of refseq

#15 chassenr closed 4 years ago
4
Snakemake error while running MetaCompass (unrecognized arguments: -T)

#14 ciemanek closed 4 years ago
5
Error with kmer-mask if input is gz compressed

#13 michoug closed 4 years ago
2
Specifying multiple .fasta reference genomes?

#12 chklovski closed 5 years ago
4
enable --nolock in snakemake workflow, or --unlock on command line

#11 taylorreiter closed 5 years ago
4
Error in executors.py -- megahit

#10 bharat1912 closed 5 years ago
1
Error in job reference_recruitment while creating output files

#9 bharat1912 closed 5 years ago
6
Errors from reference-guided mode, using example data

#8 ctseto closed 5 years ago
4
TypeError in line 133 of metacompass.iter0.ref.py, returned non-zero exit status 1 if TypeError resolved

#7 alexdthomas closed 5 years ago
0
links to database not available

#6 housw closed 5 years ago
5
Tutorial example 1 only partial output: config.json and/or metacompass.iter0.ref.py issue?

#5 alexdthomas closed 5 years ago
3
Datrie

#4 bhanusakhamuri closed 5 years ago
4
Both tutorial examples are failing

#3 nick-youngblut closed 6 years ago
4
metacompass not skipping reference_recruitment when reference is provided

#2 treangen closed 7 years ago
1
tidy up output directory

#1 treangen closed 7 years ago
1