marcelm cutadapt issues

marcelm / cutadapt

Cutadapt removes adapter sequences from sequencing reads

https://cutadapt.readthedocs.io

MIT License

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issues

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cutadapt pair-adapters almost all sequences end up in the unknown fastq files

#741 cpavloud closed 7 months ago
11
Add --trimmed-poly-a-only for poly-a as --trimmed-only for adapter

#740 a92932000 opened 7 months ago
0
why the 5' adapter wasn't trimmed when adding --revcomp.

#739 permia closed 7 months ago
2
Could not build wheels for cutadapt for mac 12.7.1 monterey

#738 Wardah0q closed 4 months ago
1
Add Reverse Complement modification function.

#737 galaxy001 opened 8 months ago
3
UMI '--rename' regex/utility

#736 joegeorgeson opened 8 months ago
1
ModuleNotFoundError: No module named 'cutadapt.cli'

#735 Chloelyc closed 6 months ago
1
Collisions in the adapter index should be handled more gracefully

#734 marcelm closed 9 months ago
0
Add sphinx-rtd-theme

#733 marcelm closed 9 months ago
0
Option `--rename` only works in single thread mode

#732 pontushojer closed 9 months ago
1
Update _kmer_finder.pyx to always use a 64-bit integer.

#731 rhpvorderman closed 9 months ago
4
kmer_finder test failing in architecture i386

#730 linqigang888 closed 9 months ago
5
Keep UMI after adapter sequence?

#729 jamesboot closed 9 months ago
3
Attempt to fix the sphinx theme

#728 marcelm closed 9 months ago
0
Make expected errors use doubles again for increased precision

#727 rhpvorderman closed 9 months ago
5
Speed up expected errors calculations using SSE2 instructions

#726 rhpvorderman closed 9 months ago
7
Add an option for maximum average error rate (--max-aer)

#725 rhpvorderman closed 9 months ago
7
Demultiplexing favors the first barcode given?!

#724 fesel2 closed 10 months ago
5
Trouble removing RevComp reads in the FWD.ForwardReads orientation and Forward reads in the FWD.ReverseReads orientation

#723 pennelli19 closed 8 months ago
3
Clarification of "Reads that were too long"

#722 HenriettaHolze closed 10 months ago
2
cutadapt.exe error: You provided 3 input file names, but either one or two are expected.

#721 ImperialBV closed 9 months ago
1
Unable to install cutadapt on Windows 11

#720 ImperialBV closed 11 months ago
4
cutadapt: error: Character 'F'

#717 Muhyees closed 11 months ago
3
Remove instead of cut adapter

#716 EivindStensrud opened 12 months ago
2
Very different trimming result between version 3.7 and 4.4

#715 fjossandon closed 11 months ago
3
Cutadapt 3.7 installation issues with python 3.11

#714 fjossandon closed 12 months ago
3
MNot a valid IUPAC code

#713 scxu-pl closed 1 year ago
3
Why did CutAdapt not remove all my N's?

#712 amy-houseman closed 1 year ago
4
How to specify read 2 adapters if 5' and 3' adapters are different.

#711 FischyM closed 1 year ago
5
Limiting the search to the first n characters

#709 ramongallego opened 1 year ago
2
Allow skipping install when building documentation

#708 marcelm closed 1 year ago
0
cutadapt installation issue - interpreter: No such file or directory

#707 emankhalaf closed 9 months ago
5
The performance for the long read, and comparison with porechop

#706 Flower9618 closed 1 year ago
0
The performance for the long read, and comparison with porechop

#705 Flower9618 opened 1 year ago
5
cutadapt.exe run with error

#704 junjunlab closed 9 months ago
2
How use cutadapt in jupyter?

#703 junjunlab closed 10 months ago
1
Installation of cutadapt in apple M2 pro 2023 fails.

#702 Kiulianm closed 1 year ago
5
Overlap analysis

#701 rhpvorderman closed 1 year ago
2
Speedup expected_errors by using a lookup table

#700 rhpvorderman closed 1 year ago
1
Filtering reads based on low-quality base ratio

#699 gilstel opened 1 year ago
5
Allow --revcomp to output original orientation reads

#698 leonorpalmeira opened 1 year ago
2
Installation issue

#697 mycotonia3 closed 10 months ago
3
Add poly-A trimming

#696 marcelm closed 9 months ago
15
Fix exponential runtime for longer adapters

#695 rhpvorderman closed 1 year ago
0
Cutadapt 4.3 runs excruciatingly long

#694 uniqueg closed 1 year ago
9
Utilize full length of the 64-bit word in the KmerFinder

#693 rhpvorderman closed 1 year ago
1
-G does not behave as expected, i.e. as -g for R2.

#692 ryandward opened 1 year ago
3
Install from source code issue

#691 CalebWM closed 1 year ago
1
Indexing improvements

#690 marcelm opened 1 year ago
0

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