mastodon-sc mastodon-deep-lineage issues

mastodon-sc / mastodon-deep-lineage

A collection of plugins to analyse lineages of tracked objects in Mastodon

BSD 2-Clause "Simplified" License

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issues

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Add link and branchlink to umap

#118 stefanhahmann opened 3 days ago
1
Use com.opencsv for writing CSV file in the export of clustering results

#117 stefanhahmann closed 1 week ago
1
Use CSV library in a commons-csv 1.2 compatible way

#116 stefanhahmann closed 1 week ago
1
Rename function lineage classification to hierarchical clustering of lineage trees

#115 stefanhahmann closed 1 week ago
1
Add Link and BranchLink to UMAP dialog

#114 stefanhahmann opened 2 weeks ago
0
Add possibility to perform dimensionality reduction using Umap algorithm

#113 stefanhahmann closed 1 week ago
2
Export classification to csv

#112 stefanhahmann closed 3 weeks ago
3
Export Results of Lineage Classification to CSV

#111 stefanhahmann closed 3 weeks ago
0
Check CI

#110 stefanhahmann closed 1 month ago
1
UMAP

#109 haesleinhuepf closed 1 week ago
1
Update pom-scijava to version 38.0.1

#108 stefanhahmann closed 1 month ago
1
Multi project classification

#107 stefanhahmann closed 1 month ago
1
Select resolution level in export ellipsoid to label image

#106 stefanhahmann closed 2 months ago
1
Make Import Spots handling single pixels and planar pixels properly

#105 stefanhahmann closed 3 months ago
3
Take start time into account for lineage tree classification

#104 stefanhahmann closed 3 months ago
1
Lineage classification does not respect start time

#103 stefanhahmann closed 3 months ago
0
Performance optimization of tree edit distance

#102 stefanhahmann closed 4 months ago
1
Lineage Classification Averaging Multiple Embryos

#101 stefanhahmann closed 1 month ago
0
Configurable dendrogram panel

#100 stefanhahmann closed 4 months ago
0
Add an optimization for the tree edit distance for the case of binary trees

#99 stefanhahmann closed 4 months ago
2
Configurable dendrogram panel

#98 stefanhahmann closed 4 months ago
1
Add similarity metric published in Guignard et al. to list of available similarity metrics

#97 stefanhahmann closed 4 months ago
1
Optimize usage of junit5 framework

#96 stefanhahmann closed 5 months ago
1
Migrate all tests from junit 4 to junit 5

#95 stefanhahmann closed 5 months ago
1
Add final modifiers to variables of method getDistanceMatrix()

#94 stefanhahmann closed 5 months ago
1
Detached3

#93 stefanhahmann closed 5 months ago
1
Detached2

#92 stefanhahmann closed 5 months ago
1
Detached

#91 stefanhahmann closed 5 months ago
1
Guignard distance

#90 stefanhahmann closed 4 months ago
1
Allow case number of roots equals number of classes

#89 stefanhahmann closed 5 months ago
1
Add export of dendrogram and scrollpane for Dendrogram

#88 stefanhahmann closed 5 months ago
2
Allow Lineage classification for the case of number of root nodes equals number of classes

#87 stefanhahmann closed 5 months ago
0
Allow Export to file for Lineage Classification Dendrogram

#86 stefanhahmann closed 5 months ago
0
Add tags to dendrogram

#85 stefanhahmann closed 5 months ago
2
Allow values of tag sets to be shown in the Lineage Classification Dendrogram

#84 stefanhahmann closed 5 months ago
0
Allow importing spots from segmented timelapse

#83 stefanhahmann closed 5 months ago
0
Test CI 2

#82 stefanhahmann closed 6 months ago
2
Test CI

#81 stefanhahmann closed 6 months ago
2
CI Test

#80 stefanhahmann closed 6 months ago
1
Import spots from label images

#79 stefanhahmann closed 5 months ago
3
Lineage Classification is not working for some cases

#78 stefanhahmann closed 6 months ago
0
Fix classification bug

#77 stefanhahmann closed 6 months ago
1
Branch Graph export to Graphml

#76 stefanhahmann closed 6 months ago
1
Update equations in readme.md

#75 stefanhahmann closed 6 months ago
1
Movement relative to neighbours

#74 stefanhahmann closed 6 months ago
2
Export total spot counts

#73 stefanhahmann closed 6 months ago
0
Export spot counts

#72 stefanhahmann closed 7 months ago
3
Make AstecReader more verbose and resilient

#71 stefanhahmann closed 7 months ago
1
Add conversion script for ASTEC data to mastodon

#70 stefanhahmann closed 7 months ago
1
Normalized cell divisions feature

#69 stefanhahmann closed 6 months ago
2