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matsengrp
/
linearham
A Bayesian Phylo-HMM for B cell receptor sequence analysis
http://matsengrp.github.io/linearham
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Bump pygments from 2.5.2 to 2.15.0
#96
dependabot[bot]
opened
1 year ago
0
Bump scipy from 1.2.2 to 1.10.0
#95
dependabot[bot]
opened
1 year ago
0
92 revbayes base image
#94
jgallowa07
closed
1 year ago
0
How to handle paired h/l data
#93
psathyrella
closed
1 year ago
0
Failed Quay build from trigger
#92
jgallowa07
closed
1 year ago
0
Add option for less verbose output dir
#91
psathyrella
closed
1 year ago
1
Branch lengths almost all much larger than hamming distance
#90
psathyrella
opened
2 years ago
0
Inferred ancestral sequences have mutations in ambiguous regions
#89
psathyrella
opened
2 years ago
0
crash in asr/ess script
#88
psathyrella
closed
2 years ago
7
Bump numpy from 1.16.6 to 1.22.0
#87
dependabot[bot]
closed
1 year ago
1
Update Master -> Main
#86
jgallowa07
closed
2 years ago
0
Github Actions & Quay Container building
#85
jgallowa07
closed
1 year ago
2
Bump numpy from 1.16.6 to 1.21.0
#84
dependabot[bot]
closed
2 years ago
1
light chain crash
#83
psathyrella
opened
2 years ago
3
Docker container doesn't build
#82
matsen
closed
2 years ago
2
update partis + maybe add --min-cluster-size arg
#81
psathyrella
closed
2 years ago
1
More informative lineage error
#80
naveenjasti
closed
3 years ago
0
Bump pygments from 2.5.2 to 2.7.4
#79
dependabot[bot]
closed
1 year ago
1
Bump pyyaml from 5.3 to 5.4
#78
dependabot[bot]
closed
1 year ago
1
Bump jinja2 from 2.10.3 to 2.11.3
#77
dependabot[bot]
closed
1 year ago
1
update readme with newer (?) output files
#76
psathyrella
closed
1 year ago
2
Cause of huge number of low-probability nodes
#75
psathyrella
closed
1 year ago
6
Use new partis fcn add_seqs_to_line()
#74
psathyrella
closed
1 year ago
4
fix my readme edits
#73
psathyrella
closed
4 years ago
3
make default tag on quay.io
#72
psathyrella
closed
4 years ago
1
change actions to positional argument
#71
psathyrella
closed
4 years ago
0
NodeList object where it expected a string
#70
psathyrella
closed
4 years ago
1
Do we really want to use scons?
#69
psathyrella
closed
4 years ago
3
git describe crashes build
#68
psathyrella
closed
4 years ago
1
remove dockerhub image
#67
psathyrella
closed
4 years ago
1
remove mention of ubuntu 16.04 from readme
#66
psathyrella
closed
4 years ago
4
linearham crashed
#65
scharch
closed
4 years ago
7
SCons not recognizing arguments to linearham?
#64
scharch
closed
4 years ago
3
figure out why output dir has to be under `/linearham`
#63
scharch
opened
4 years ago
7
Docker runs example and quits
#62
scharch
closed
4 years ago
5
Replace wercker and docker hub CI with gh-actions
#61
eharkins
closed
4 years ago
1
freeze revbayes
#60
eharkins
closed
4 years ago
0
Cluster parsing
#59
eharkins
closed
4 years ago
1
linearham processing failure -- need help interpreting/solving error message
#58
wfs-lilly
closed
4 years ago
4
Can't seem to get linearham to run -- probably an issue understanding inputs
#57
wfs-lilly
closed
4 years ago
6
add mafft to container
#56
eharkins
closed
4 years ago
0
Docker image missing mafft
#55
wfs-lilly
closed
4 years ago
33
Partis updates and submodule management
#54
eharkins
closed
4 years ago
0
Dockeredits
#53
matsen
closed
5 years ago
0
Write partis style output containing sampled linearham annotations
#52
eharkins
closed
5 years ago
0
Add c++ exception when reading null flexbounds
#51
eharkins
closed
5 years ago
0
Add more info to manual
#50
psathyrella
closed
4 years ago
1
Light chain
#49
dunleavy005
closed
5 years ago
0
44 awakening pr (linearham executable + weighted bootstrap w/ASR)
#48
matsen
closed
5 years ago
0
linearham executable + weighted bootstrap w/ASR
#47
dunleavy005
closed
5 years ago
0
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