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matsengrp
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phip-flow
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
MIT License
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Document config files
#24
jgallowa07
closed
2 years ago
0
Make example dataset from Caitlin et. al. 2021
#23
jgallowa07
closed
2 years ago
0
Organize files
#22
jgallowa07
closed
2 years ago
0
DSL 2
#21
jgallowa07
closed
2 years ago
0
Update README.md
#20
matsen
closed
3 years ago
0
18 readme
#19
jgallowa07
closed
3 years ago
0
README Description of inputs and config
#18
jgallowa07
closed
3 years ago
0
15 refactor ngs seq dir requirement
#17
jgallowa07
closed
3 years ago
0
This PR removes the technical replicate aggregation and adds alignment stats to each sample.
#16
jgallowa07
closed
3 years ago
0
Re-factor the config setup.
#15
jgallowa07
closed
3 years ago
0
organized scripts
#14
jgallowa07
closed
3 years ago
0
Remove all non-relavent scripts.
#13
jgallowa07
closed
3 years ago
0
Alignments stats
#12
jgallowa07
closed
3 years ago
0
Local Alignment
#11
jgallowa07
closed
3 years ago
0
Dynamic alignment schemes
#10
jgallowa07
closed
4 years ago
0
Add more alignment schemes based on experiment type.
#9
jgallowa07
closed
4 years ago
0
Add automated simulation testing.
#8
jgallowa07
closed
3 years ago
1
Port to aws batch
#7
jgallowa07
closed
4 years ago
0
Sim env and docs
#6
jgallowa07
closed
4 years ago
0
Generate and collect counts
#5
jgallowa07
closed
4 years ago
0
Align counts
#4
jgallowa07
closed
4 years ago
0
Quantify the impact of the library batch by comparing between tech and bio replicates
#3
matsen
closed
3 years ago
0
Initial infrastructure for nextflow pipeline.
#2
jgallowa07
closed
4 years ago
0
Restructure.
#1
jgallowa07
closed
4 years ago
0
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