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mattssca
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vcfMAN
Pipeline for manipulating and processing of VCF files. Standardize outputs and downstream plotting for overview of relevant metrics and variant distribution.
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Citation of the vcfMAN script
#36
miltongr21
opened
11 months ago
1
R dependacies errors
#34
deepbiomed9
opened
1 year ago
0
Additional reference genome builds
#33
mattssca
opened
3 years ago
0
NATE: Tables
#32
mattssca
closed
3 years ago
3
EXTRA: SNV ideogram
#31
mattssca
closed
3 years ago
3
EXTRA: Small variant size distributions
#30
mattssca
opened
3 years ago
2
NATE: Circos plots description
#29
mattssca
closed
3 years ago
1
NATE: SV count table
#28
mattssca
closed
3 years ago
3
Add plot descriptions
#27
mattssca
closed
3 years ago
1
update main readme
#26
mattssca
closed
3 years ago
1
flow chart
#25
mattssca
closed
3 years ago
1
update figures
#24
mattssca
closed
3 years ago
1
Box widths
#23
mattssca
closed
3 years ago
1
plot margins
#22
mattssca
closed
3 years ago
1
colour of snv distance plot
#21
mattssca
closed
3 years ago
1
ideogram (SNV) width
#20
mattssca
closed
3 years ago
1
Remove example VCFs
#19
mattssca
closed
3 years ago
1
Circos plots
#18
mattssca
closed
3 years ago
1
y-axis values (SV/chr count)
#17
mattssca
closed
3 years ago
1
SNV ideogram
#16
mattssca
closed
3 years ago
1
Properly formatted VCFs
#15
mattssca
closed
3 years ago
1
Command line parameter
#14
mattssca
closed
3 years ago
1
include refNs for small variants ideogram
#13
mattssca
closed
3 years ago
1
Github token
#12
mattssca
closed
3 years ago
1
Gzip funcitons
#11
mattssca
closed
3 years ago
1
vcf_man
#10
mattssca
closed
3 years ago
1
Binned Size plot
#9
mattssca
closed
3 years ago
1
Log10 (violin plot)
#8
mattssca
closed
3 years ago
1
CRAN mirror
#7
mattssca
closed
3 years ago
1
SNV distance outliers
#6
mattssca
closed
3 years ago
1
SNV coverage
#5
mattssca
closed
3 years ago
1
EXTRA: google drive
#4
mattssca
opened
3 years ago
0
EXTRA: Additional Chromosomes
#3
mattssca
opened
3 years ago
0
Adding references
#2
mattssca
closed
3 years ago
1
NOTICE: Inconsistencies running in Rstudio and console?
#1
mattssca
closed
3 years ago
1