maunei bpipe issues - Githubissues

maunei / bpipe

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Pipeline failed. Job returned UNKNOWN status prior to completion

#111 GoogleCodeExporter opened 8 years ago
0
Each pipeline as separate jobs to PBS

#110 GoogleCodeExporter opened 8 years ago
0
Next step do not wait previous one

#109 GoogleCodeExporter opened 8 years ago
3
Ability to store value from a shell ouput

#108 GoogleCodeExporter opened 8 years ago
0
Huge memory leak when scaling up

#107 GoogleCodeExporter opened 8 years ago
0
setting lsf parameters in bpipe.config using another config file

#106 GoogleCodeExporter opened 8 years ago
1
Failing passing a variable using the -p option

#105 GoogleCodeExporter opened 8 years ago
0
HTML Generated by bpipe 0.9.8.6_rc2 incorrectly reports time in graphical summary

#104 GoogleCodeExporter opened 8 years ago
0
0.9.8.6_rc2 bpipe jobs doesn't

#103 GoogleCodeExporter opened 8 years ago
0
Access to original $input files from command line

#102 GoogleCodeExporter opened 8 years ago
1
Duplicate long form options for -r and -R

#101 GoogleCodeExporter opened 8 years ago
0
Report does not accurately reflect repeated and parallel stages

#100 GoogleCodeExporter opened 8 years ago
0
--yes option not effective

#99 GoogleCodeExporter opened 8 years ago
0
Version 0.9.8.6_beta_4 failed test

#98 GoogleCodeExporter opened 8 years ago
0
out of memory processing when operating on 500+ files

#97 GoogleCodeExporter opened 8 years ago
0
SGE - problem specifying parallel environment

#96 GoogleCodeExporter opened 8 years ago
1
How do I use an input file defined when I run the pipeline but is only used after several steps?

#95 GoogleCodeExporter opened 8 years ago
1
java.lang.NullPointerException when mixing "%" and .using(..)

#94 GoogleCodeExporter opened 8 years ago
0
Impossible to pass an empty string parameter on the command line

#93 GoogleCodeExporter opened 8 years ago
1
Report on module variables would be nice

#92 GoogleCodeExporter opened 8 years ago
0
Report is not generated in the specified output directory

#91 GoogleCodeExporter opened 8 years ago
0
Input prefix inaccurate at first pipeline stage

#90 GoogleCodeExporter opened 8 years ago
0
Pipeline with single "forward" module crashes

#89 GoogleCodeExporter opened 8 years ago
0
Determining input file type

#88 GoogleCodeExporter opened 8 years ago
0
clean git checkout does not compile due to missing libraries

#87 GoogleCodeExporter closed 8 years ago
2
'requires' is undocumented

#86 GoogleCodeExporter opened 8 years ago
0
Support for manual set of regions

#85 GoogleCodeExporter opened 8 years ago
5
Script not found, when loaded via environment modules

#84 GoogleCodeExporter opened 8 years ago
0
Region support: reporting bug

#83 GoogleCodeExporter opened 8 years ago
0
Support for PBS Professional

#82 GoogleCodeExporter opened 8 years ago
3
Unsupported major.minor version 51.0

#81 GoogleCodeExporter opened 8 years ago
5
Unexpected concatenated filenames in transform statement

#80 GoogleCodeExporter opened 8 years ago
0
Ability to report back summary results from a pipeline stage to appear in the report

#79 GoogleCodeExporter opened 8 years ago
0
Hello World fails in bpipe-0.9.8.1 on Mac OS X 10.7.5

#78 GoogleCodeExporter opened 8 years ago
0
trying to detect multiple inputs

#77 GoogleCodeExporter opened 8 years ago
1
Transform insists on CLI input

#76 GoogleCodeExporter opened 8 years ago
0
Filter cryptic error message

#75 GoogleCodeExporter opened 8 years ago
0
Syntax errors using bash arrays

#74 GoogleCodeExporter opened 8 years ago
0
Rerunning a pipeline kills doc/index.html timings and tool versions

#73 GoogleCodeExporter opened 8 years ago
0
Command Line Option to Specify Config

#72 GoogleCodeExporter opened 8 years ago
0
GroovyStarter error

#71 GoogleCodeExporter opened 8 years ago
7
struggling with input/output files

#70 GoogleCodeExporter opened 8 years ago
1
LSF: handle jobs killed by resource limits

#69 GoogleCodeExporter opened 8 years ago
1
Please describe multiple file output

#68 GoogleCodeExporter opened 8 years ago
1
using() does not work with segment

#67 GoogleCodeExporter opened 8 years ago
0
segment does not see implicit input variable

#66 GoogleCodeExporter closed 8 years ago
4
Produce with Wild Card Pattern Fails to Pass Files out of Parallel Stage

#65 GoogleCodeExporter opened 8 years ago
0
Option for Bpipe to Retry a Failed Pipeline or Stage Automatically

#64 GoogleCodeExporter opened 8 years ago
0
Input files from outside working directory incorrectly redirected to working directory

#63 GoogleCodeExporter opened 8 years ago
0
Ability to customize or eliminate 'chr' prefix in parallel pipeline

#62 GoogleCodeExporter opened 8 years ago
0