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maxplanck-ie
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HiCAssembler
Software to assemble contigs/scaffolds into chromosomes using Hi-C data
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object of type 'int' has no len()
#24
ManuPoretti
opened
2 years ago
0
Problem with installation
#23
MartinLaforest
opened
2 years ago
5
Conflict with Hi-CExplorer
#22
karimi81
opened
3 years ago
3
ImportError: No module named HiCMatrix
#21
ddelgadillod
opened
3 years ago
2
Assemble pipeline crashes on iteration 0, "Graph object has no attribute 'node'"
#20
ens-LCampbell
opened
3 years ago
1
Pipeline crashes if no good bin on contig
#19
dominik-handler
opened
4 years ago
0
ValueError: 'ScaffHiC_xxx' is not in list
#18
yangxiaofeill
opened
4 years ago
0
using HiC-Pro to create maps instead
#17
rob123king
opened
4 years ago
1
Python 3
#16
dominik-handler
opened
4 years ago
5
ValueError: The first argument of bincount must be non-negative
#15
zhanyinx
opened
4 years ago
1
Assemble self.N50 Error
#14
francicco
opened
5 years ago
3
Problem with cooler version
#13
nadegeguiglielmoni
opened
5 years ago
4
HiCexplorer version
#12
xinwang-bio
opened
5 years ago
5
AssertionError
#11
xinwang-bio
opened
5 years ago
4
TypeError: object of type 'int' has no len()
#10
xinwang-bio
opened
5 years ago
4
SyntaxError: invalid syntax
#9
zhuangfjnu
opened
5 years ago
1
object of type 'int' has no len() in Scaffolds.py _remove_weakest len(path)
#8
gtrichard
opened
5 years ago
7
misassembly correction
#7
yongyiyu
opened
5 years ago
3
Virilis assembly
#6
fidelram
closed
6 years ago
0
Solve loops problem
#5
fidelram
closed
6 years ago
0
Find best path direction
#4
fidelram
closed
6 years ago
0
Put back small scaffolds not used for hic assembly
#3
fidelram
closed
7 years ago
0
insert removed scaffolds back into assembly
#2
fidelram
closed
7 years ago
0
This PR adds the option to split scaffolds when misassemblies are detected
#1
fidelram
closed
7 years ago
0