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mbhall88
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rasusa
Randomly subsample sequencing reads or alignments
https://doi.org/10.21105/joss.03941
MIT License
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chore(main): release 2.0.0
#71
mbhall88
closed
2 months ago
1
Error when using --output twice
#70
pmielle
closed
2 months ago
2
Error
#69
nbenzakour
closed
2 months ago
1
chore(main): release 1.0.0
#68
mbhall88
closed
2 months ago
1
feat: add ability to subsample alignments
#67
mbhall88
closed
2 months ago
0
chore(main): release 0.8.0
#66
mbhall88
closed
6 months ago
1
Error: unable to gather read lengths for the first input file
#65
npdungca
closed
9 months ago
2
Generating only half of the target depth
#64
npdungca
closed
6 months ago
6
won't detect input file
#63
rmormando
closed
10 months ago
1
Question: there is a way to start from a bam file instead of a fastq?
#62
leone93
closed
10 months ago
1
Bump bzip2 from 0.4.3 to 0.4.4
#61
dependabot[bot]
closed
1 year ago
0
illumina read input error
#60
IndreNav
closed
1 year ago
2
Random sampling based on bases for the metagenomic dataset
#59
AnupamGautam
closed
1 year ago
1
Add number and fraction options
#58
mbhall88
closed
2 years ago
0
Bump rgb from 0.8.14 to 0.8.32
#57
dependabot[bot]
closed
2 years ago
2
Does rasusa outputs reads that still cover the entire original genome?
#56
MostafaYA
closed
2 years ago
1
Multi-threading approach
#55
Teklu67
opened
2 years ago
7
JOSS paper
#38
mbhall88
closed
2 years ago
0
Feature: Min/max coverage threshold
#37
bbalog87
closed
2 years ago
2
Suggestion: Raise warning when desired level of coverage is not possible
#36
k3yavi
closed
2 years ago
1
Docker image issue
#35
genignored
closed
2 years ago
9
Add number and fraction options
#34
mbhall88
closed
2 years ago
0
Allow genome size to take a FASTA/Q index file
#33
mbhall88
closed
2 years ago
0
Add option to explicitly set the target number of bases
#32
mbhall88
closed
2 years ago
0
Calculate genome size from an index file
#31
mbhall88
closed
2 years ago
1
Input parameter for number of bases in addition to coverage and genome size
#30
tomazberisa
closed
2 years ago
6
Restore output file compression
#29
mbhall88
closed
2 years ago
0
Speedup by replace `HashSet` by a `Vec<bool>`
#28
natir
closed
2 years ago
3
Compress output when requested
#27
mbhall88
closed
2 years ago
5
`HashSet` is slow
#26
natir
closed
2 years ago
3
Suggestion: replace needletail by noodles and niffler
#25
natir
opened
2 years ago
1
Merge fix for #22 onto master
#24
mbhall88
closed
2 years ago
0
Change fastx parsing library to needletail
#23
mbhall88
closed
3 years ago
0
Lower than expected coverage for illumina paired end reads
#22
ilyavs
closed
2 years ago
9
Modernise error handling
#21
mbhall88
closed
3 years ago
0
Multi-threading approach implementation
#20
camilogarciabotero
closed
3 years ago
3
Finer control over coverage
#19
nirajmehta96
closed
4 years ago
2
add Illumina support
#18
mbhall88
closed
4 years ago
0
Support for subsampling alignment to uniform coverage
#17
IsmailM
closed
2 months ago
5
Relationship to filtlong
#16
tseemann
closed
4 years ago
2
Support for paired-end reads?
#15
tseemann
closed
4 years ago
5
Estimate genome size automatically
#14
tseemann
opened
4 years ago
8
add homebrew recipe
#13
mbhall88
closed
4 years ago
2
add singularity option
#12
mbhall88
closed
4 years ago
0
add docker option
#11
mbhall88
closed
4 years ago
0
Add Licence
#10
mbhall88
closed
4 years ago
0
Create bioconda recipe
#9
mbhall88
closed
4 years ago
0
Distribute on crates.io
#8
mbhall88
closed
4 years ago
0
Write README
#7
mbhall88
closed
4 years ago
1
Add code docs
#6
mbhall88
closed
4 years ago
0
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