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mbhall88
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thesis
My PhD thesis
https://doi.org/10.17863/CAM.81350
Creative Commons Attribution 4.0 International
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Conclusion
#24
mbhall88
closed
2 years ago
6
transmission cluster figs
#23
iqbal-lab
closed
2 years ago
2
SUBMIT!!
#22
mbhall88
closed
2 years ago
0
Declaration
#21
mbhall88
closed
2 years ago
0
Dedication
#20
mbhall88
closed
2 years ago
0
Acknowledgements
#19
mbhall88
closed
2 years ago
0
Abstract
#18
mbhall88
closed
3 years ago
8
Chapter 1 - Introduction
#17
mbhall88
closed
2 years ago
13
Construction of a H37Rv-derived Mtb reference PRG
#16
mbhall88
closed
3 years ago
0
An Mtb species-specific nanopore basecalling model improves accuracy
#15
mbhall88
closed
3 years ago
0
Benchmarking assembly methods with genomic data from three technologies
#14
mbhall88
closed
3 years ago
0
Building PRGs of varying density
#13
mbhall88
closed
3 years ago
0
Nanopore SNPs are highly concordant with Illumina
#12
mbhall88
closed
3 years ago
0
Genome graphs provide superior nanopore indel calls compared to a pileup approach
#11
mbhall88
closed
3 years ago
0
Nanopore data identifies transmission clusters inline with Illumina
#10
mbhall88
closed
3 years ago
0
Write de novo methods
#9
mbhall88
closed
3 years ago
0
Quality control (methods)
#8
mbhall88
closed
3 years ago
0
Write methods for basecall model training
#7
mbhall88
closed
3 years ago
1
Write text describing data pre-processing for head-to-head data
#6
mbhall88
closed
3 years ago
1
Write text describing assembly of head-to-head samples
#5
mbhall88
closed
3 years ago
1
Chapter 5 - Improving Nanopore sequencing accuracy for Mycobacterium tuberculosis
#4
mbhall88
closed
2 years ago
4
Chapter 4 - Predicting M. tuberculosis drug resistance
#3
mbhall88
closed
2 years ago
12
Chapter 3 - Nanopore sequencing for Mycobacterium tuberculosis public health applications: transmission clustering
#2
mbhall88
closed
2 years ago
16
Chapter 2 - Variant discovery in genome graphs
#1
mbhall88
closed
2 years ago
9