mc2-center nf-histoqc issues

mc2-center / nf-histoqc

A Nextflow wrapper for HistoQC

MIT License

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issues

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Simplify results and log collection by using collectFile

#35 adamjtaylor opened 2 months ago
0
Fix built in config

#34 adamjtaylor opened 3 months ago
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Group outputs in subdirs

#33 adamjtaylor closed 3 months ago
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Refine mask output and publishDir strategy

#32 adamjtaylor closed 3 months ago
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Dynamic resource allocation

#31 adamjtaylor opened 4 months ago
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Dynamic resource allocation

#30 adamjtaylor opened 4 months ago
1
Allow use of a custom config file

#29 adamjtaylor closed 4 months ago
10
Add workflow dispatch for docker build

#28 adamjtaylor closed 4 months ago
0
Allow for file staging inside a process

#27 adamjtaylor opened 6 months ago
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Improve faliure mode where no tissue is remaining for downstream modules

#26 adamjtaylor opened 7 months ago
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Improve faliure mode where magnification is not found

#25 adamjtaylor opened 7 months ago
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Append results to the samplesheet

#24 adamjtaylor opened 7 months ago
0
Add openslide converter

#23 adamjtaylor closed 7 months ago
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Add a module to convert to openslide format

#22 adamjtaylor closed 7 months ago
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Add support for custom config files

#21 adamjtaylor closed 4 months ago
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Update branch from main

#20 adamjtaylor closed 8 months ago
0
Remove beforeScript that set docker permissions (not-needed)

#19 adamjtaylor closed 8 months ago
1
Simplfy histoqc module

#18 adamjtaylor closed 8 months ago
1
Prepare a tidy results file

#17 adamjtaylor closed 8 months ago
0
Remove sage profile?

#16 thomasyu888 opened 8 months ago
0
Should each process run in the histoqc container?

#15 thomasyu888 closed 8 months ago
1
Add meta.id tag to histoqc process

#14 adamjtaylor closed 9 months ago
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Add max resource limits

#13 adamjtaylor closed 9 months ago
0
Replace tower profile with optimised mc2 profile

#12 adamjtaylor closed 9 months ago
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Refine error strategy for tower config

#11 adamjtaylor closed 9 months ago
0
Reduce tower profile resource allocation

#10 adamjtaylor closed 9 months ago
0
Add nf-prov plugin

#9 adamjtaylor opened 9 months ago
1
Reduce image scan trigers

#8 adamjtaylor closed 9 months ago
0
Update README.md example

#7 adamjtaylor closed 9 months ago
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Update schema

#6 adamjtaylor closed 9 months ago
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Fix output structure

#5 adamjtaylor closed 9 months ago
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Add action to run workflow in PR

#4 adamjtaylor closed 9 months ago
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Collect results

#3 adamjtaylor closed 9 months ago
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Add license and citations

#2 adamjtaylor closed 9 months ago
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Reconfigure in nf-core style

#1 adamjtaylor closed 9 months ago
0