issues
search
mcmero
/
SVclone
A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
BSD 3-Clause "New" or "Revised" License
40
stars
10
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Output file for SV VAF
#37
poojachandra
closed
2 months ago
5
'snv_results.RData' file not being generated
#36
poojachandra
closed
3 months ago
1
Error while running SV clone using the 'consensus' mode for SNVs
#35
poojachandra
closed
4 months ago
7
Fetching reads fails in annotate step
#34
kerstinth
closed
4 months ago
2
VAF adjustment for duplications
#33
surajraj99
closed
8 months ago
3
svclone count --> ValueError: multiple tag sizes BAM file
#32
handoko12u
closed
8 months ago
7
Not collecting all span evidence available
#31
surajraj99
closed
7 months ago
6
Use EasyBuild as alternative method to install SVclone.
#30
fizwit
closed
1 year ago
1
Interruption at cluster step
#29
sainadfensi
closed
1 year ago
4
SVclone bioconda installation error
#28
kim1339
closed
1 year ago
3
AttributeError when combining ccube_sv_input files
#27
mdiaz09
closed
1 year ago
2
error in file path for writing post-assign pdf
#26
anoronh4
closed
1 year ago
0
CNV input is breaking svclone filter
#25
anoronh4
closed
2 years ago
6
Errors on annotating
#24
alhafidzhamdan
closed
2 years ago
1
Example data
#23
kbredemeyer
closed
2 years ago
2
SVclone annotate skipping SV events
#22
kbredemeyer
closed
3 years ago
3
No Configuration File Found
#21
kbredemeyer
closed
3 years ago
1
cluster output snv_results.RData not being generated
#20
Ignatiocalvin
closed
3 years ago
5
CRAM files
#19
azhark2
closed
3 years ago
2
Several questions regarding CCF estimation results
#18
willhooper
closed
3 years ago
1
Determinism
#17
willhooper
closed
3 years ago
3
Warning: record contains invalid attributes, skipping
#16
Biojenifer
closed
3 years ago
2
FFPE vs Frozen
#15
mkinnaman
closed
3 years ago
3
CCFs > 1
#14
willhooper
closed
3 years ago
5
All SNVs getting filtered
#13
willhooper
closed
3 years ago
2
multiple tag size
#12
mkinnaman
closed
4 years ago
2
VCF input formats
#11
willhooper
closed
4 years ago
2
Pyclone Input
#10
mkinnaman
closed
4 years ago
2
Error in if (trim > 0 && n) { : missing value where TRUE/FALSE needed
#9
alvinwt
closed
4 years ago
1
0 spanning read counts
#8
trwo
closed
4 years ago
2
count function stalls out
#7
mkinnaman
closed
4 years ago
8
interpretation of results / clustering with only 1 SV
#6
Sames-Jtudd
closed
4 years ago
7
Error : No section: 'BamParameters'
#5
KeyTals
closed
4 years ago
1
installation//import problem
#4
EricDeveaud
closed
4 years ago
1
Fetching reads failed
#3
glnegri
closed
5 years ago
1
newer pysam versions break count.py
#2
wresch
closed
5 years ago
1
Docker Version
#1
xtmgah
closed
6 years ago
1