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mehta-lab
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recOrder
3D quantitative label-free imaging with phase and polarization
BSD 3-Clause "New" or "Revised" License
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[DOCS] Biological sample contribution
#433
talonchandler
closed
12 months ago
3
[DOCS] Clarify relation to other repos in README
#432
talonchandler
closed
1 year ago
0
"Orientation Legend" -> "Visualization" tab
#431
talonchandler
closed
1 year ago
2
Rename the 'Orientation Legend' tab
#430
ziw-liu
closed
1 year ago
0
Background scaling, naming, and squeezing
#429
talonchandler
closed
1 year ago
2
0.4.0 revised documentation
#428
talonchandler
closed
1 year ago
2
Sample contribution
#427
talonchandler
closed
1 year ago
6
Improved birefringence overlays
#426
talonchandler
closed
1 year ago
3
Redo overlay2
#425
talonchandler
closed
1 year ago
2
Implement schema
#424
talonchandler
closed
1 year ago
4
Simplify Dask graph before computing overlay
#423
ziw-liu
closed
1 year ago
3
Clean deprecated
#422
talonchandler
closed
1 year ago
2
`recOrder` data schema
#421
talonchandler
closed
1 year ago
8
Check for PyQt5
#420
talonchandler
closed
1 year ago
2
Do not convert scale metadata from micromanager
#419
talonchandler
closed
1 year ago
7
[BUG] GUI-generated layers are incorrectly scaled
#418
talonchandler
closed
1 year ago
2
Birefringence overlays on top
#417
talonchandler
closed
1 year ago
6
[BUG] Dragging HCS plates into ome-zarr does not generate overlay
#416
talonchandler
closed
1 year ago
1
GUI save to plate
#415
talonchandler
closed
1 year ago
2
Bump to `iohub==0.1.0.dev5`
#414
talonchandler
closed
1 year ago
2
Retardance reconstructions in nm
#413
talonchandler
closed
1 year ago
2
Multiprocessing after 0816 refactor
#412
edyoshikun
closed
1 year ago
4
Refactor apply_inverse_transfer_function file for multiprocessing
#411
talonchandler
closed
1 year ago
3
Need to bump iohub version as there are issues to get info at position level
#410
edyoshikun
closed
1 year ago
1
[BUG] If PyQt5 is in your environment, recOrder will use it (causing GUI checkboxes to fail)
#409
talonchandler
closed
1 year ago
5
CLI creates empty HCS zarr then fills it
#408
talonchandler
closed
1 year ago
1
[BUG] `iohub info` does not work with reconstructed hcs plates
#407
talonchandler
closed
1 year ago
3
[BUG] Birefringence overlays do not show up on top after repeated acquisitions
#406
talonchandler
closed
1 year ago
1
"Flip Orientation" and "Invert Phase Contrast" GUI checkboxes
#405
talonchandler
closed
1 year ago
4
Skip `QFileDialog.Options()`
#404
talonchandler
closed
1 year ago
2
[BUG] Browse dialogs boxes fail in PyQT6 has no QFileDialog.Options()
#403
talonchandler
closed
1 year ago
1
Standardize CLI
#402
talonchandler
closed
1 year ago
3
WIP: standardize CLI
#401
talonchandler
closed
1 year ago
1
Remove `recorder view`
#400
talonchandler
closed
1 year ago
2
Pass scale metadata through `recorder reconstruct`
#399
talonchandler
closed
1 year ago
2
Reconstruct a subset of time indices
#398
talonchandler
closed
1 year ago
5
Passing the voxel (z,y,x) in micrometers in zattrs per position
#397
edyoshikun
closed
1 year ago
0
`apply_inverse_transfer_function_cli` is not very modular, blocking multiprocessing
#396
talonchandler
closed
1 year ago
4
0.4.0 installation documentation
#395
talonchandler
closed
1 year ago
8
0.3.1 documentation patch
#394
talonchandler
closed
1 year ago
1
On-the-fly Reconstruction
#393
clinton-huynh
opened
1 year ago
3
Multiprocessing_230802
#392
edyoshikun
closed
1 year ago
2
Bump dependencies and enable widget test
#391
ziw-liu
closed
1 year ago
2
Retardance reconstructions should appear in `nm`, not `um`
#390
talonchandler
closed
1 year ago
0
Implement multiprocessing for `apply_inv_tf`
#389
talonchandler
closed
1 year ago
1
Live reconstruction compatibility features
#388
talonchandler
closed
2 months ago
4
napari hub preview tests are failing
#387
talonchandler
closed
1 year ago
3
Warnings related to colorspacious
#386
talonchandler
opened
1 year ago
0
Remove assertion and unused function
#385
ziw-liu
closed
1 year ago
1
Fix 0.4.0dev tests
#384
talonchandler
closed
1 year ago
7
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