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merenlab
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oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
GNU General Public License v2.0
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fixed unexpected bytes in o-boxplot.R
#36
lguangyu
closed
1 year ago
1
check for no root decomposition when updating toplogy
#35
didillysquat
closed
3 years ago
1
Unexpected loss of sequences during decomposition
#34
didillysquat
closed
3 years ago
3
Python3
#33
FlorianTrigodet
closed
4 years ago
1
Multiple entropy peaks with PacBio CCS reads
#29
pneumowidow
closed
5 years ago
4
No module named _tkinter
#28
ghost
opened
6 years ago
0
Length error
#27
jpearl01
closed
6 years ago
1
Purity score
#26
jackmen
opened
7 years ago
2
Not all reads have the same length
#25
nikolay12
closed
8 years ago
1
Dependency Versions
#24
gblanchard4
opened
8 years ago
2
Dead URL
#23
pbuttigieg
closed
8 years ago
1
Django issue
#22
meren
closed
8 years ago
6
Fixing o-create-GG-alignment-template-from-taxon
#21
shekhov
closed
9 years ago
1
Complete figures o
#20
pcarval1
closed
9 years ago
1
the use of --skip-gexf-network-file option fails the run
#19
meren
opened
10 years ago
0
Added a setup.py to ease installation.
#18
bahadir
closed
10 years ago
0
Oligotyping Purity Score
#17
ozturan
closed
10 years ago
0
Adjust blast search
#16
jackmen
opened
10 years ago
2
number of samples recovered from the input file HAS TO BE checked
#15
meren
closed
11 years ago
1
avoid lists, use set() whenever possible
#14
meren
closed
11 years ago
1
replace USEARCH with blastn
#13
meren
closed
11 years ago
1
if NCBI BLAST search fails, it shouldn't fail the oligotyping process
#12
meren
closed
12 years ago
0
actual number of reads in a dataset
#11
meren
closed
12 years ago
0
provide data matix for within oligotype diversity
#10
meren
closed
11 years ago
1
sanity of the alignment should be confirmed
#9
meren
closed
11 years ago
1
sanity check of components selected by user.
#8
meren
closed
11 years ago
1
html output
#7
meren
closed
12 years ago
0
OSError: too many open files
#6
meren
closed
12 years ago
0
rare oligotype elimination is not perfect..
#5
meren
closed
12 years ago
0
visualizing alignment
#4
meren
closed
12 years ago
1
entropy component selection issue
#3
meren
closed
12 years ago
0
visualizing oligotype profiles as a stack bar figure
#2
meren
closed
12 years ago
1
chimeric sequences in representative sequences file
#1
meren
closed
12 years ago
1