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meyer-lab
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mechanismEncoder
Developing patient-specific phosphoproteomic models using mechanistic autoencoders
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Bump scipy from 1.6.1 to 1.10.0
#47
dependabot[bot]
opened
1 year ago
0
Bump numpy from 1.20.1 to 1.22.0
#46
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.20.1 to 1.21.0
#45
dependabot[bot]
closed
2 years ago
1
Autoencoder: Missing data imputation
#44
JacksonLChin
closed
3 years ago
1
Basic autoencoder: Cross-validation update
#40
JacksonLChin
closed
3 years ago
1
Added uncorrected phospho data
#38
sgosline
closed
3 years ago
1
trying to update my branch
#37
sgosline
closed
3 years ago
0
Add an introduction
#34
aarmey
closed
3 years ago
0
Methods text related to autoencoder, ODE, data import
#30
aarmey
opened
3 years ago
1
Text
#29
aarmey
closed
3 years ago
1
updating phospho data branch, it's behind
#27
sgosline
closed
3 years ago
1
Patient CPTAC data
#26
aarmey
opened
3 years ago
4
Added linear, non-mechanistic autoencoder to basic_autoencoder directory
#25
JacksonLChin
closed
3 years ago
1
Issues with cptac data
#24
FFroehlich
closed
3 years ago
4
Plot expression of phosphoproteins from FLT3-MAPK pathway
#23
sgosline
opened
3 years ago
2
Implement a standard autoencoder
#22
aarmey
closed
3 years ago
0
Prior work
#21
aarmey
closed
3 years ago
2
Manuscript outline
#20
aarmey
closed
3 years ago
2
12/4/2020 call
#19
aarmey
closed
3 years ago
1
Regularization and SVD initialization
#18
aarmey
closed
3 years ago
1
Compute correlation across proteins, phosphosites
#17
sgosline
opened
3 years ago
2
implement pretraining pipeline
#16
FFroehlich
closed
3 years ago
5
Parameter transformation from inflation to mechanistic model
#15
FFroehlich
closed
3 years ago
4
Setup initialization
#14
aarmey
closed
3 years ago
0
Setup regularization
#13
aarmey
closed
3 years ago
0
Manuscript wasn't being passed as input
#12
aarmey
closed
3 years ago
0
PyPESTO branch missing
#11
aarmey
closed
3 years ago
1
Add manuscript files
#10
aarmey
closed
3 years ago
1
Identify time points to be collected from cell line drug treatment
#9
sgosline
opened
3 years ago
2
Training
#8
FFroehlich
closed
3 years ago
1
Adds base implementation of comnbined encoder/mechanistic model loss function
#7
FFroehlich
closed
3 years ago
2
Phospho data collection scripts
#6
sgosline
closed
3 years ago
6
Curate FLT3-MAPK from literature
#5
sgosline
opened
4 years ago
1
September 24, 2020 call
#4
aarmey
closed
3 years ago
10
Implement small, phosphosite-specific ODE model for demonstration
#3
aarmey
closed
3 years ago
0
Identify the right CPTAC data for model fitting
#2
aarmey
closed
3 years ago
9
Implement a linear autoencoder
#1
aarmey
closed
3 years ago
0