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mhammell-laboratory
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TElocal
A package for quantifying transposable elements at a locus level for RNAseq datasets.
GNU General Public License v3.0
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Normalisation methods
#48
anna-elisabet
opened
2 weeks ago
1
TElocal_indexer
#47
zhangqc723
opened
3 weeks ago
7
differential analysis TElocal regarding hundreds of samples
#46
frankligy
opened
1 month ago
0
open reading frames in each TE element
#45
frankligy
opened
1 month ago
2
Some elements have more reads in unique mode vs multi mode
#44
R-Najjar
opened
1 month ago
6
TPM from the count matrix ?
#43
ptranvan
opened
2 months ago
3
using TElocal to quantify locus TE expression
#42
mechealeth
opened
2 months ago
2
Adding additional transposable elements to annotation file
#41
R-Najjar
opened
2 months ago
2
Docker container?
#40
R-Najjar
opened
2 months ago
5
Inconsistency between TEtranscript data and TElocal data.
#39
ptranvan
opened
2 months ago
4
TElocal Citation
#38
smarhon
opened
2 months ago
1
Can I apply TElocal to Single End Sequencing
#37
smarhon
opened
2 months ago
8
Error attempting to load .locInd file
#36
Kiliankleemann
closed
3 months ago
2
TElocal for transcript information?
#35
sanhe374
closed
5 months ago
4
TE duplicate numbers
#34
sophiemarlow
closed
6 months ago
4
quantify in the family level
#33
AlisaGU
closed
8 months ago
5
how to speed up
#32
AlisaGU
closed
8 months ago
9
GRCh39 ensemble
#31
songlyzz
closed
3 months ago
5
Multimapper-aware bigwig tracks
#30
emattei
opened
1 year ago
3
T2T_CHM13_v2_rmsk_TE.gtf.locInd.locations
#29
alha89
closed
1 year ago
2
TElocal and TEcounts 0.0
#28
ChiaraGTH
closed
3 months ago
3
hs1 / t2t annotation table
#27
maxfieldk
closed
1 year ago
7
TEcount
#26
TaoHJiang
closed
1 year ago
2
TEcount and TElocal
#25
TaoHJiang
closed
1 year ago
14
Generate the locInd annotation from GTF
#24
ZunpengLiu
closed
1 year ago
2
Question about the TE expression at the locus level
#23
QianzhaoJ
closed
1 year ago
2
Issue with "Chr1" instead of "1" in the index file
#22
qzhuang8
closed
1 year ago
9
Treatment v Control
#21
keroguynes
closed
1 year ago
2
output format issue and index error during processing
#20
jamesc99
closed
2 years ago
1
Multiple BAM input
#19
hatran22
closed
1 year ago
1
TElocal index
#18
olivertam
closed
3 months ago
24
TE index for non-model plant
#17
wushyer
closed
1 year ago
2
setting random seed?
#16
ax-ekk
closed
2 years ago
4
locInd file for GRCh37
#15
kiekyon
closed
2 years ago
5
Could not retrieve index file
#14
SJRussell
closed
2 years ago
3
Creating locInd file with a curated list of insertions
#13
emattei
closed
3 years ago
8
GTF index for custom genome/annotation?
#12
javibio-git
closed
3 years ago
10
Zebrafish index for TElocal
#11
stefaniehoho
closed
3 years ago
5
TE Coordinates and TEsmall question
#10
juanb001
closed
3 years ago
7
Error in building gene index
#9
whiteorchid
closed
3 years ago
7
error at line 285
#8
jofrank1988
closed
3 years ago
8
% uniquely mapped reads
#7
laijen000
closed
3 years ago
1
Mapping TE loci back to genome
#6
laijen000
closed
4 years ago
5
How to build ind database?
#5
xunchen85
closed
3 years ago
7
0 counts for TEs
#4
savytskanatalia
closed
4 years ago
5
Coordinates
#3
xunchen85
closed
4 years ago
2
User specified IND file
#2
xunchen85
closed
4 years ago
2
Producing exactly the same results as TEcount
#1
xunchen85
closed
4 years ago
4