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microbiomedata
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metaPro
Workflow for meta-proteomics analysis
BSD 2-Clause "Simplified" License
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QA Benchmark specification
#26
ssarrafan
closed
2 years ago
3
WDL generation - make sure it matches the metaP pipeline
#25
ssarrafan
closed
2 years ago
3
add concat of input FASTA with contaminate file
#24
picowatt
closed
2 years ago
0
11 adding splitfasta logic to handle fastas 1gb in size
#23
picowatt
closed
2 years ago
0
Concatenating FASTA and contaminate files
#22
picowatt
closed
2 years ago
0
Benchmarking2.0: collect additional stats for newer runs (disk access, memory, N/w bandwidth, cpu time).
#20
anubhav0fnu
closed
1 year ago
7
process Prosser uniref dataset.
#19
anubhav0fnu
closed
2 years ago
2
Proteomics fixes
#18
ssarrafan
closed
2 years ago
3
metapro WDL bug fixing and enhancement.
#17
anubhav0fnu
closed
3 years ago
3
test and process spruce dataset on pnnl-MSC(Tahoma).
#16
anubhav0fnu
closed
2 years ago
8
Update internal_analysis.py
#15
yuqiangao
opened
3 years ago
0
update internalAnalysis and integrate with the workflow .
#14
anubhav0fnu
closed
3 years ago
1
building, testing & integrating kaiko model to the metaPro workflow
#13
anubhav0fnu
closed
1 year ago
2
re-process stegen dataset upon getting new genomic ids or attributes from JGI metagenome assembly.
#12
anubhav0fnu
closed
2 years ago
2
adding splitFasta logic to handle Fastas > 1gb in size.
#11
anubhav0fnu
closed
2 years ago
4
Benchmarking msgf+
#10
anubhav0fnu
closed
3 years ago
5
Writing Cromwell-WDL to execute commands for multiple containers.
#9
anubhav0fnu
closed
3 years ago
9
testing code improvements with a few dry runs on our dataset(stegen).
#8
anubhav0fnu
closed
3 years ago
1
Preparation Metadata: Proteomics
#21
mslarae13
opened
3 years ago
4
Add example data and example run command
#7
Michal-Babins
closed
3 years ago
5
Finalize workflow for metaproteomics v2
#6
ssarrafan
closed
3 years ago
4
Finalize workflow for metaproteomics
#5
ssarrafan
closed
3 years ago
2
define cases where blank and QC would be needed
#4
dehays
closed
3 years ago
1
Workflows - Test small data sets for workflows (metaPro)
#3
ssarrafan
closed
3 years ago
1
Workflows - Test large data sets for workflows (metaPro)
#2
ssarrafan
closed
3 years ago
0
documentation
#1
hubin-keio
closed
4 years ago
1
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