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microbiomedata
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metadata-template-transformation
ETL between NMDC submission portal study records and user facility templates
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MUTTs auto fill column X, Collection Site or Growth Conditions, with env_medium
#40
mslarae13
opened
9 hours ago
0
MUTTs auto fill column W, Sample Isolated From, with the sample type / extension selected
#39
mslarae13
opened
9 hours ago
0
Flip flop columns M and L so plate label is first in export
#38
mslarae13
opened
9 hours ago
0
Implement use of bearer token authentication system for `nmdc-server` API
#37
sujaypatil96
closed
1 day ago
1
rename `--unique-field` to `--sample-id-field`?
#36
turbomam
opened
3 weeks ago
0
put a constraint on the values allowed for the `--user-facility` option
#35
turbomam
opened
3 weeks ago
0
what automation is a available for getting the output XLSX files to the user facilities?
#34
turbomam
opened
3 weeks ago
0
rename input files directry to somethign like `configuration/`
#33
turbomam
opened
3 weeks ago
1
MUTTs updates super issue
#32
mslarae13
closed
1 month ago
1
suggested updates to the documentation
#31
mslarae13
opened
3 months ago
0
source_mat_id is no longer required
#30
mslarae13
closed
3 weeks ago
2
test for Christa
#29
aclum
closed
1 year ago
1
Collection Month
#28
mslarae13
opened
1 year ago
0
sample collection device is missing
#27
mslarae13
opened
1 year ago
0
sample collection method is missing
#26
mslarae13
opened
1 year ago
0
sample_process missing
#25
mslarae13
opened
1 year ago
0
Sample storage conditions missing
#24
mslarae13
opened
1 year ago
0
EMSL shipped sample size missing
#23
mslarae13
opened
1 year ago
0
source_mat_id for EMSL is a different identifier than source_mat for NMDC. these shouldn't be identical
#22
mslarae13
closed
3 months ago
1
analysis type is formatted incorrectly
#21
mslarae13
opened
1 year ago
0
GUID needs split source and ID
#20
mslarae13
opened
1 year ago
0
Updates to MUTTS for EMSL export
#19
mslarae13
opened
1 year ago
0
JGI column order must match their template
#18
mslarae13
opened
1 year ago
0
Does Month need to be written out? Is the digit ok?
#17
mslarae13
closed
1 year ago
2
Will 'Biosafety Material Category' ever change?
#16
mslarae13
opened
1 year ago
5
Does Column order matter for JGI
#15
mslarae13
closed
1 year ago
2
Isotope label enumeration doesn't work with existing NMDC isotope slot
#14
mslarae13
opened
1 year ago
1
Country only for JGI
#13
mslarae13
opened
1 year ago
0
Update Maximum depth for JGI export
#12
mslarae13
opened
1 year ago
0
Update Depth in JGI exportt
#11
mslarae13
opened
1 year ago
0
Update Longitude in JGI export
#10
mslarae13
opened
1 year ago
0
Update Latitude for JGI export
#9
mslarae13
opened
1 year ago
0
Update Collection Day for JGI export
#8
mslarae13
opened
1 year ago
0
Update Collection Year for JGI export
#7
mslarae13
opened
1 year ago
0
Update Was sample DNAse treated? column for JGI export
#6
mslarae13
opened
1 year ago
2
Updates to MUTTS for JGI Metagenomics
#5
mslarae13
opened
1 year ago
0
Delete ~$EMSL_Metadata_Example.xlsm
#4
cmungall
closed
1 year ago
0
header vs 1,2,3 keys in JSON config file is confusing
#3
turbomam
opened
1 year ago
0
combine the TSV and JSON configuration files into one of any format
#2
turbomam
opened
1 year ago
0
needs a better title
#1
turbomam
opened
1 year ago
1