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mikeblazanin
/
gcplyr
gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
https://mikeblazanin.github.io/gcplyr/
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additional discussion of smoothing considerations in vignette
#68
mikeblazanin
opened
1 year ago
3
why does write_blocks sometimes write "" and sometimes writes NA
#67
mikeblazanin
closed
1 year ago
1
Add discussion of Dryad-appropriate data storage to vignette
#66
mikeblazanin
opened
1 year ago
0
replace print_df uses in vignette with screencaps from excel
#65
mikeblazanin
opened
1 year ago
0
Video demo
#64
mikeblazanin
opened
1 year ago
0
trans_block_to_wide returns tibble, not df
#63
mikeblazanin
closed
1 year ago
1
vignette examples of integrating gcplyr workflow with other packages
#62
mikeblazanin
opened
1 year ago
0
allow block_names to be specified by vector for location, or list of vectors for location (i.e. metadata)
#61
mikeblazanin
opened
1 year ago
2
in make_design, change pattern_string to pattern and allow it to be a string or vector
#60
mikeblazanin
closed
1 year ago
1
Add simple example of entire workflow at start of vignette
#59
mikeblazanin
closed
1 year ago
1
vignette discussion of fitting vs non-fitting based analyses
#58
mikeblazanin
closed
1 year ago
3
Change calc_deriv to have a type argument or something like that
#57
mikeblazanin
closed
1 year ago
1
vignette section for write_blocks
#56
mikeblazanin
closed
1 year ago
1
vignette section for multiple blocks/wides from one file
#55
mikeblazanin
closed
1 year ago
1
check import_blockdesigns for multiple plates
#54
mikeblazanin
closed
7 months ago
1
write_blocks tests
#53
mikeblazanin
opened
1 year ago
1
check that defaults for wellnames are consistent
#52
mikeblazanin
closed
1 year ago
8
Add method to calculate lag time
#51
mikeblazanin
closed
1 year ago
6
Integrate with QurvE
#50
mikeblazanin
closed
1 year ago
1
Add Savitzky Golay filter as method for smooth_data
#49
mikeblazanin
closed
1 year ago
3
Add ability to fit common growth models to data
#48
mikeblazanin
opened
1 year ago
0
blank subtraction in calc_deriv
#47
mikeblazanin
closed
1 year ago
1
tests for make_design
#46
mikeblazanin
closed
1 year ago
1
update vignette for make_design
#45
mikeblazanin
closed
1 year ago
1
write_blocks
#44
mikeblazanin
closed
1 year ago
1
trans_wide_to_blocks
#43
mikeblazanin
closed
1 year ago
1
trans_tidy_to_wide
#42
mikeblazanin
opened
2 years ago
0
Comment every line of code in vignette
#41
mikeblazanin
closed
1 year ago
1
Change vignette examples with read_blocks, uninterleave, etc into using import_blockmeasures
#40
mikeblazanin
closed
1 year ago
1
block_names or into as column header for import_blockdesigns
#39
mikeblazanin
closed
2 years ago
1
Allow read_blocks to not save a block_name
#38
mikeblazanin
opened
2 years ago
0
read_tidys tests
#37
mikeblazanin
opened
2 years ago
0
read_tidys function
#36
mikeblazanin
closed
2 years ago
1
bug in moving-median where the range of values being included in the window isn't correct (bc it's inclusive or exclusive perhaps)
#35
mikeblazanin
closed
2 years ago
1
allow separate_gc to work on list of data frames
#34
mikeblazanin
opened
2 years ago
0
vignette section for first_under
#33
mikeblazanin
closed
1 year ago
1
expand first_under to be any threshold-crossing event
#32
mikeblazanin
closed
1 year ago
2
On page 11, it may be useful to emphasize the expected shape format of the design table when one is "Reading design elements from files" using the "read_table" function.
#31
mikeblazanin
closed
2 years ago
1
vignette example_design p19
#30
mikeblazanin
closed
2 years ago
1
Add window_width (in units of x) to smooth_data subfunctions
#29
mikeblazanin
closed
1 year ago
1
Improve efficiency of find_local_extrema
#28
mikeblazanin
closed
1 year ago
2
Add functions to smooth_data: LOWESS, spline models
#27
mikeblazanin
closed
1 year ago
1
add capability for make_design to accept simple wellnumbers
#26
mikeblazanin
opened
2 years ago
0
Calling xlsx during remote building
#25
mikeblazanin
closed
1 year ago
1
Easy plotting
#24
mikeblazanin
opened
2 years ago
0
integrate with other packages, eg growthcurver
#23
mikeblazanin
closed
1 year ago
1
Allow pattern string to be vector in make_tidydesign
#22
mikeblazanin
closed
1 year ago
1
Add citation()
#21
mikeblazanin
closed
2 years ago
1
transform tidy designs to blocks
#20
mikeblazanin
closed
2 years ago
2
import_blockdesign function
#19
mikeblazanin
closed
2 years ago
2
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