mikolmogorov Ragout issues

mikolmogorov / Ragout

Chromosome-level scaffolding using multiple references

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issues

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setup.py install --prefix=XXXX does not install necessary modules

#39 EricDeveaud closed 5 years ago
1
utity script verify-minimap.py :: hardcoded minimap

#38 EricDeveaud closed 5 years ago
0
utility script chromosome-report.py :: REF_NAME hardcoded

#37 EricDeveaud closed 5 years ago
0
scripts utility blocks-dotplot.py contains hardcoded paths

#36 EricDeveaud closed 5 years ago
1
AttributeError: 'MultiGraph' object has no attribute 'edges_iter'

#35 tillea closed 5 years ago
4
python setup.py build fails on Scientific Linux 6.8

#34 mcsimenc closed 5 years ago
1
Installation is broken

#33 grayfall closed 5 years ago
2
No module named parser

#32 ghost closed 6 years ago
0
Runtime error at phylogeny step

#31 apredeus closed 6 years ago
1
can't start Sibelia

#30 WeiWei1112 closed 5 years ago
2
Lot of errors lead to "RuntimeError: maximum recursion depth exceeded"

#29 agroppi closed 6 years ago
5
Issues with synteny blocks coverage is too low

#28 isaurabhkr closed 5 years ago
2
I'd like to see the tree that Ragout infers from my HAL alignment

#27 jennalang closed 6 years ago
1
make error- urgent!

#26 Deeptirao closed 6 years ago
1
Phylogenetic tree tools recommendations

#25 mictadlo closed 1 year ago
0
AttributeError: 'Tree' object has not attribute 'identifier'

#24 nickp60 closed 6 years ago
2
Installing Sibelia for Ragout on Mac OSX

#23 CristianRiccio closed 7 years ago
1
Synteny breaks over the origin of replication/end of sequence

#22 bastian-wur closed 7 years ago
1
Ragout with HAL input

#21 stephenrdoyle closed 7 years ago
4
Unlocalized Scaffolds

#20 ReemaSingh closed 7 years ago
8
two small potential enhancements

#19 yjx1217 closed 1 year ago
2
ERROR: No sequences read for genome X.

#18 nluhmann closed 7 years ago
4
Verify ragout2 assembly

#17 xingwu2 closed 6 years ago
3
ValueError: too many values to unpack

#16 cistarsa closed 6 years ago
9
Error reading permutations

#15 xingwu2 closed 7 years ago
9
Error - IndexError: list index out of range

#14 BrGAl closed 6 years ago
4
ERROR: "ragout-overlap" native module not found

#13 anubhabkhan closed 6 years ago
10
IndexError: list index out of range

#12 svkazakov closed 6 years ago
1
AssertionError: seq_end > seq_start

#11 kmhernan closed 8 years ago
17
INFO: Reading contigs file : KeyError: 'chr1'

#10 sklages closed 8 years ago
4
Installation error during make

#9 chandni177 closed 7 years ago
6
add option for not breaking input scaffold?

#8 yjx1217 closed 8 years ago
4
Ragout can read fasta files

#7 JessicaCruz31 closed 7 years ago
3
key error during breakpoint graph building

#6 stsmall closed 7 years ago
4
Fail in case of zero branch lengths

#5 mikolmogorov closed 9 years ago
0
'make' returns error on my server, but not on local machine

#4 elsherbini closed 9 years ago
10
No sequences read for genome

#3 michoug closed 8 years ago
1
Sibelia not running multi-threads with -t or --threads option

#2 stsmall closed 4 years ago
1
assemblers

#1 kspham closed 10 years ago
0