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mims-harvard
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TDC
Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science
https://tdcommons.ai
MIT License
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add gene perturb code
#268
kexinhuang12345
closed
4 months ago
1
better expose anndata dataframe in the single-cell dataloaders
#267
amva13
opened
4 months ago
0
add primekg test
#266
amva13
closed
4 months ago
2
Neurips benchmarks -- complete cell line and perturbation splits on the benchmark for perturb outcome
#265
amva13
closed
4 months ago
0
Support augmentation of single-cell datasets via label projection
#264
amva13
opened
4 months ago
0
Neurips benchmarks -- Protein Peptide
#263
amva13
closed
4 months ago
0
pip packaging fix on deeppurpose. package minor release update
#262
amva13
closed
4 months ago
0
complete counterfactual benchmark
#261
amva13
closed
4 months ago
0
Change pinnacle and pentelute dataset names to more appropriate ones
#260
amva13
closed
4 months ago
0
Neurips benchmarks -- evaluate_many on scdti
#259
amva13
closed
4 months ago
0
improve scdti test
#258
amva13
closed
5 months ago
0
Add single-cell DTI benchmark (Neurips benchmarks)
#257
amva13
closed
5 months ago
1
bug in loading scPerturb datasets
#256
abearab
opened
5 months ago
3
minor fixes for KG scripts
#255
abearab
closed
4 months ago
4
Add PINNACLE DTI data and dataloader to TDC
#254
amva13
closed
5 months ago
0
JNK3 uses ECFP4 rather than ECFP6 as claimed on the website
#253
JanoschMenke
opened
5 months ago
0
add gene perturb outcome tasks
#252
kexinhuang12345
closed
5 months ago
2
Integrate the CELLXGENE API with TDC DataLoader.get_data()
#251
amva13
closed
5 months ago
0
Add conda build status to README.md
#250
amva13
closed
5 months ago
0
restore circle-ci to README.md
#249
amva13
closed
5 months ago
0
fix circle-ci
#248
amva13
closed
5 months ago
0
update package version fix oracle and huggingface
#247
amva13
closed
5 months ago
0
remove duplicated name
#246
abearab
closed
5 months ago
1
Oracles not satisfying public benchmarks
#245
amva13
closed
3 months ago
6
Small discrepancies in the documentation of oracles
#244
miguelgondu
closed
3 months ago
6
Add documentation on using the hf models
#243
amva13
closed
5 months ago
0
Oracle Pickles are outdated
#242
amva13
closed
3 months ago
1
test list as well
#241
amva13
closed
5 months ago
0
Oracle bug -- fix https://github.com/mims-harvard/TDC/issues/238
#240
amva13
closed
5 months ago
0
Load CRISPR perturbation datasets from scPerturb [Feature Request]
#239
abearab
closed
5 months ago
4
Oracle issue - Yuchen
#238
amva13
closed
5 months ago
16
SingleCellPrediction should instead be labled Perturb-based prediction task for scperturb datasets
#237
amva13
closed
5 months ago
4
Integrate AnnData and scperturb
#236
amva13
closed
6 months ago
3
[Docking Leaderboard DRD3] Reproducibility Issues
#235
Jonas-Verhellen
closed
3 months ago
15
fixes for the upcoming 0.5.0 release -- currently released as 0.4.6
#234
amva13
closed
6 months ago
0
fixed broken protein sequences
#233
amva13
closed
6 months ago
0
Add the Pentelute dataset + framework changes
#232
amva13
closed
6 months ago
0
The meaning of the score in the document 'toy_data/ppi.txt'
#231
ke-ning
closed
6 months ago
2
fix up remaining test issues
#230
amva13
closed
6 months ago
0
cellxgene clean-up
#229
amva13
closed
6 months ago
0
fix cellxgene file to not include duplicate disabler as that's encoded in conda package now
#228
amva13
closed
6 months ago
0
Ship cellxgene
#227
amva13
closed
7 months ago
0
deploy conda tests to all branches and pull requests into main
#226
amva13
closed
7 months ago
0
run tests for all branches and pulls on main
#225
amva13
closed
7 months ago
0
add YAPF to GH Actions -- fix remaining lint errors in tdc/
#224
amva13
closed
7 months ago
0
Modernizing / productionize : google lint applied to tdc/* and conda env modified to pass all tests
#223
amva13
closed
7 months ago
1
DeepPurpose baseline installation error
#222
mireklzicar
closed
6 months ago
1
Conda tests via GH Actions
#221
amva13
closed
7 months ago
0
Conda environment setup for TDC. Also installs cellxgene-census
#220
amva13
closed
7 months ago
0
rdkit change caused failed circle-ci build
#219
amva13
closed
7 months ago
0
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