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molgenis
/
gavin-plus
A platform for standardized modular downstream genome analysis.
GNU Lesser General Public License v3.0
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Bump guava from 25.0-jre to 29.0-jre
#85
dependabot[bot]
opened
3 years ago
2
Bump commons-io from 2.4 to 2.7
#84
dependabot[bot]
opened
3 years ago
2
fix: jenkins home dir moved to variable: ${JENKINS_AGENT_WORKDIR}
#83
sidohaakma
closed
4 years ago
2
Feature/algorithm only
#82
bartcharbon
opened
5 years ago
1
Replace deprecated parent pom.xml with spring-boot-starter-parent
#81
dennishendriksen
closed
5 years ago
1
Replace org.molgenis.vcf with vcf-io dependency
#80
dennishendriksen
closed
5 years ago
1
Fix #78: rlv info fields + merged info field are not separated by semi-colon
#79
bartcharbon
closed
5 years ago
0
rlv info fields + merged info field are not separated by semi-colon
#78
RoanKanninga
closed
5 years ago
0
[CHORE] removed codecov and updated release flow with MOLGENIS standard
#77
sidohaakma
closed
5 years ago
2
update sonar commands in jenkinsfile to be similar to molgenis
#76
bartcharbon
closed
5 years ago
0
Add option to output both splitted and merged RLV INFO fields
#75
bartcharbon
closed
6 years ago
1
[FIX] updated rights to execute release script
#74
sidohaakma
closed
6 years ago
0
[FIX] Updated rights on executing release script
#73
sidohaakma
closed
6 years ago
0
Update release bash file [1.4]
#72
bartcharbon
closed
6 years ago
0
Update release bash file [MASTER]
#71
bartcharbon
closed
6 years ago
0
remove travis build
#70
bartcharbon
closed
6 years ago
0
Add release plugin to pom
#69
bartcharbon
closed
6 years ago
0
Add configuration to release GAVIN via brandnew jenkins release process
#68
bartcharbon
closed
6 years ago
0
Fix #64 and #65 and implement "option to add splitted ANN fields"
#67
bartcharbon
closed
6 years ago
1
Fix #65: Option to not print prefix for RLV fields and possibly 64: variants out of order
#66
bartcharbon
closed
6 years ago
1
output is not what it used to be
#65
RoanKanninga
closed
6 years ago
0
output of Gavin is not sorted
#64
RoanKanninga
closed
6 years ago
3
VCF writer does not overwrite fields
#63
joerivandervelde
closed
6 years ago
0
Data file for reported pathogenic variant not generic
#62
joerivandervelde
closed
6 years ago
1
Used allele frequency field should be parameterized
#61
joerivandervelde
opened
6 years ago
0
Bugfixes and data upgrade
#60
joerivandervelde
closed
6 years ago
2
Update POM to 1.3.0-SNAPSHOT
#59
bartcharbon
closed
6 years ago
0
Stabilize POM to 1.2.0
#58
bartcharbon
closed
6 years ago
0
Fix unit test (mock method for SampleTokens)
#57
bartcharbon
closed
6 years ago
0
remove extra space after loglevel
#56
bartcharbon
closed
6 years ago
0
Feature/default threshold
#55
bartcharbon
closed
6 years ago
0
Change logging to be more like previous releases
#54
bartcharbon
closed
6 years ago
0
Add default thresholds to calibrations file
#53
bartcharbon
closed
6 years ago
1
Do not log ch.qos.logback logging + print VCF sample headers
#52
bartcharbon
closed
6 years ago
1
M5900 Cli options and various improvements
#51
dennishendriksen
closed
6 years ago
2
Changes for M5900
#50
bartcharbon
closed
6 years ago
0
add Logging framework, cmd option for split RLV + refactorings and sonar fixes
#49
bartcharbon
closed
6 years ago
1
Display Gavin version from manifest
#48
dennishendriksen
closed
6 years ago
1
Update POM to 1.2.0-SNAPSHOT
#47
bartcharbon
closed
6 years ago
0
update POM to 1.1.1-SNAPSHOT
#46
bartcharbon
closed
6 years ago
0
Stabilize POM for release 1.1.0
#45
bartcharbon
closed
6 years ago
0
Remove MOLGENIS dependency from GAVIN
#44
dennishendriksen
closed
6 years ago
0
Remove MOLGENIS dependency from GAVIN
#43
bartcharbon
closed
6 years ago
1
Testing sonar integration [Do not merge]
#42
fdlk
closed
6 years ago
1
Support CSQ field in addition to ANN field
#41
joerivandervelde
closed
6 years ago
3
Report trio inheritance check separate from other inclusion criteria
#40
joerivandervelde
opened
6 years ago
1
Support for affected parents in trio analysis
#39
joerivandervelde
opened
6 years ago
1
Use explicit notation of de novo variants
#38
joerivandervelde
closed
6 years ago
1
In trio analysis, take into account gender of child
#37
joerivandervelde
opened
6 years ago
1
Indels are not annotated in the GAVIN output
#36
RoanKanninga
closed
6 years ago
0
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