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molgenis
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molgenis-py-consensus
GNU Lesser General Public License v3.0
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feat: Improvements VKGL data release process and guide
#39
dtroelofsprins
opened
1 year ago
0
chore(deps): bump numpy from 1.21.3 to 1.22.0
#38
dependabot[bot]
opened
2 years ago
0
chore: switch to pod template
#37
tommydeboer
closed
2 years ago
1
docs: fix steps for clinvar file generation with newest release of vkgl-clinvar-writer
#36
marikaris
closed
2 years ago
1
fix: freeze numpy release
#35
marikaris
closed
2 years ago
1
Jenkins test failing
#34
marikaris
closed
2 years ago
0
fix: all tsv files now have the tsv extension
#33
marikaris
closed
2 years ago
1
Specify paths more detailed in SOP
#32
bartcharbon
opened
2 years ago
0
Docs/fix readme
#31
marikaris
closed
2 years ago
2
docs: fix SOP for new changes
#30
marikaris
closed
2 years ago
1
fix: consensus script crashes in ConsensusReporter
#29
marikaris
closed
3 years ago
1
Consensus script crashes in ConsensusReporter
#28
dennishendriksen
closed
3 years ago
1
Consensus script creates tsv with csv extension
#27
marikaris
closed
2 years ago
0
Config input/output paths lead to errors without a trailing slash
#26
dennishendriksen
opened
3 years ago
0
Move VKGL ClinVar Tool to separate repository
#25
bartcharbon
closed
3 years ago
2
Move java code to root folder
#24
bartcharbon
closed
3 years ago
1
Add ClinVar submission tool
#23
bartcharbon
closed
3 years ago
1
Tools for ClinVar submission
#22
bartcharbon
closed
3 years ago
1
Cant run scripts in pycharm without changing directory of config in code
#21
marikaris
opened
3 years ago
0
fix: read config from appropriate folder when running from terminal
#20
marikaris
closed
3 years ago
1
fix(molgenisconfigparser): remove server, user and password as we don't use it anymore
#19
marikaris
closed
3 years ago
2
improvement: write output of consensusfile as tsv instead of csv
#18
marikaris
closed
3 years ago
2
docs: update documentation for putting data on cluster
#17
marikaris
closed
3 years ago
2
docs: update readme
#16
marikaris
closed
3 years ago
2
Fix/faster code
#15
marikaris
closed
3 years ago
3
docs(readme): update docs for newest version of data-transform-vkgl
#14
marikaris
closed
3 years ago
1
Variants with same chrom/pos/ref/alt but different transcripts?
#13
dennishendriksen
opened
3 years ago
2
Fix broken links in pipeline diagram
#12
marikaris
closed
3 years ago
1
Fix broken links in pipeline diagram
#11
marikaris
closed
3 years ago
1
Missing requirements in README prerequisites
#10
dennishendriksen
opened
3 years ago
1
improvement(diagram): add VCF step to diagram
#9
marikaris
closed
3 years ago
1
Fix/history wrong variants
#8
marikaris
closed
3 years ago
2
Fix/history wrong variants
#7
marikaris
closed
3 years ago
1
fix(consensusfilegenerator): add history for indels after fix on data-transform-vkgl
#6
marikaris
closed
4 years ago
1
fix(HistoryWriter): Make sure writer works with new export
#5
marikaris
closed
4 years ago
1
fix(All over the place): Fixes for the new export
#4
marikaris
closed
4 years ago
0
Fix/sonar
#3
fdlk
closed
5 years ago
0
Fix sonar sources
#2
fdlk
closed
5 years ago
0
feat(consensus): Add consensus pipeline functionality
#1
marikaris
closed
5 years ago
0