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monagrland
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MB_Pipeline
Metabarcoding Pipeline for Illumina Sequencing Data
GNU Affero General Public License v3.0
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Update mafft to latest version on conda-forge
#30
kbseah
closed
6 months ago
0
Fix bug when `multilvl` method not used in config file
#29
kbseah
closed
6 months ago
0
Minor fixes
#28
kbseah
closed
7 months ago
0
Length filtering of ASVs
#27
kbseah
opened
8 months ago
0
Drop global conda directive, add instructions for snakedeploy
#26
kbseah
closed
9 months ago
1
Install pytransaln from conda not pip
#25
kbseah
closed
9 months ago
0
error message "TypeError: 'NoneType' object is not iterable"
#24
BWobbii
closed
9 months ago
1
pip dependency in Conda env spec causes problem for Docker build?
#23
kbseah
closed
9 months ago
1
Reorganize workflow files to Snakemake guidelines
#22
kbseah
closed
9 months ago
0
Alternative ref databases
#21
kbseah
closed
9 months ago
0
DnoisE produces different output when CORES=1
#20
kbseah
closed
9 months ago
1
Enforce Snakemake minimum version
#19
kbseah
closed
9 months ago
0
Automatically generate unit tests?
#18
kbseah
opened
10 months ago
0
Follow Snakemake recommended folder structure
#17
kbseah
closed
9 months ago
2
Cutadapt may produce zero-length sequences after adapter trimming
#16
kbseah
closed
9 months ago
0
Update Documentation regarding file table
#15
LasKru
closed
9 months ago
1
Report pipeline and database versions in MultiQC report
#14
kbseah
opened
1 year ago
0
Incorporate dnoise and pseudogene screening
#13
kbseah
closed
11 months ago
2
multilvl_taxonomic_classification.py script fails if taxonomy strings truncated
#12
kbseah
opened
1 year ago
1
Filter out pseudogenes for coding sequences
#11
kbseah
closed
10 months ago
2
Manage file-sample relationship in a config file
#10
kbseah
closed
10 months ago
2
Determine if adequate sequencing depth for each sample
#9
kbseah
opened
1 year ago
0
Update Instructions
#8
LasKru
closed
9 months ago
1
Add entropy ratio testing for choosing alpha parameter value for denoising
#7
kbseah
closed
10 months ago
8
Code formatting
#6
kbseah
closed
9 months ago
1
Add rule compute phylogenetic tree
#5
kbseah
closed
10 months ago
3
Simplify and reorganize code
#4
kbseah
closed
1 year ago
0
Simplify Conda environment definitions
#3
kbseah
closed
1 year ago
0
Package versions/builds in Conda env definition files
#2
kbseah
closed
1 year ago
2
Sickel
#1
LasKru
closed
2 years ago
0