monarch-initiative dipper issues

monarch-initiative / dipper

Data Ingestion Pipeline for Monarch

https://dipper.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

57 stars 26 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Add data from the Variant Interpretation for Cancer Consortium (VICC)

#813 kshefchek opened 5 years ago
0
Fix haplotype modelling, rework tests

#812 kshefchek closed 5 years ago
0
Request: Need a dump of all dipper IRIs in a text file

#811 matentzn closed 5 years ago
7
MMRRC outputting 0 triples

#810 kshefchek closed 5 years ago
4
rewrite of Dataset.py to improve metadata emitted by Dipper

#809 justaddcoffee closed 5 years ago
20
Use wget to fetch panther files

#808 kshefchek closed 5 years ago
1
remove taxa default arg, add ensembl to supported

#807 kshefchek closed 5 years ago
1
include straight http too

#806 TomConlin closed 5 years ago
0
fix single to double quotes

#805 TomConlin closed 5 years ago
0
Fix 'is biomarker for' relationship by either renaming it or removing it when not appropriate

#848 pnrobinson opened 5 years ago
4
Fix incorrect variant ID in clinvar

#804 kshefchek closed 5 years ago
0
Stringdb delay for fetch

#803 TomConlin closed 5 years ago
1
String header check

#802 TomConlin closed 5 years ago
0
String Ensembl

#801 TomConlin closed 5 years ago
1
include forgotten commit

#800 TomConlin closed 5 years ago
0
taxa ids are passed in as strings

#799 kshefchek closed 5 years ago
1
tiny misc for release qc

#798 TomConlin closed 5 years ago
1
Post process IRI sweep

#797 TomConlin closed 5 years ago
1
Remove testsuite from zfin

#796 kshefchek closed 5 years ago
1
Category mixups in 201907 build

#795 kshefchek closed 5 years ago
2
remove python 3.5 from travis, specify 3.6 in jenkinsfile

#794 kshefchek closed 5 years ago
0
OMIM, Monochrom/UCSCBands

#793 TomConlin closed 5 years ago
1
Fixes required for datasets.ttl

#792 cmungall closed 5 years ago
3
Ensembl refactor to fix missing column failure

#791 TomConlin closed 5 years ago
4
Clinvar assert RDF object is not None

#790 TomConlin closed 5 years ago
1
Add environment variables for single source runs

#789 kshefchek closed 5 years ago
0
DRY out jenkins pipeline; add gard, cohd etc to curie map

#788 kshefchek closed 5 years ago
2
Generally improve evidence/provenance capture and reporting

#787 mbrush closed 5 years ago
2
Add omia and ucscbands to jenkins pipeline

#786 kshefchek closed 5 years ago
1
Gene associations for EDS2 not correct

#784 cmungall closed 5 years ago
4
OMIM phenotypic series inclusion

#783 TomConlin closed 5 years ago
1
OMIM "feature" choice for associating PhenotypicSeries

#782 TomConlin closed 5 years ago
6
push the release date

#780 TomConlin closed 5 years ago
0
minor fixes to GLOBAL_TERMS.yaml

#778 justaddcoffee closed 5 years ago
1
HGNC @ and common test ids

#777 TomConlin closed 5 years ago
0
Re order global translation table

#776 TomConlin closed 5 years ago
0
line folding & change fly branch

#775 TomConlin closed 5 years ago
0
drop yeast species taxon from commandlines

#774 TomConlin closed 5 years ago
0
adding fungi uri to curie map the rest is all noise

#773 TomConlin closed 5 years ago
0
Simplifying WormBase modeling

#772 kshefchek closed 5 years ago
1
filter out foreign transgenic alleles, add back upheno classes

#771 kshefchek closed 5 years ago
0
Question: how to ingest and model "phenotype manifest in" data from FlyBase

#770 kshefchek opened 5 years ago
3
change labels of ZFIN and MGI genotypes to native syntax

#769 justaddcoffee closed 5 years ago
1
Gene Ontology

#768 TomConlin closed 5 years ago
1
Go annotation

#767 TomConlin closed 5 years ago
2
Latest GO ingest missing human data

#766 kshefchek closed 5 years ago
1
https://archive.monarchinitiative.org/ has not been updated since 201902

#765 cmungall closed 5 years ago
1
Request to ingest regulatory information: huTF_classification

#764 realmarcin opened 5 years ago
0
Request to ingest regulatory information: SwissRegulon

#763 realmarcin opened 5 years ago
0
Misc term updates and EOM refactor

#762 TomConlin closed 5 years ago
0

Previous Next