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monarch-initiative
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dipper
Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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UCSCBands (& Monochrom)
#863
TomConlin
closed
4 years ago
0
CTD fix & refactor
#862
TomConlin
closed
4 years ago
1
Pull latest from IMPC
#861
kshefchek
closed
4 years ago
1
OBI:0100026 as taxon for variant objects
#860
deepakunni3
opened
4 years ago
10
Anatomy to gene link
#865
pnrobinson
opened
4 years ago
11
THAS is not a gene
#859
pnrobinson
closed
4 years ago
6
Update ontology term to one that exists
#858
TomConlin
closed
4 years ago
4
update term label to match OLS
#857
TomConlin
closed
4 years ago
0
Update obsloeted ontology term to Date Created
#856
TomConlin
closed
4 years ago
0
Fix monarch owl build step in Dipper pipeline
#855
justaddcoffee
closed
4 years ago
2
Fix for GO ingest
#854
justaddcoffee
closed
4 years ago
3
NCBIGene fix omim dbxref
#853
TomConlin
closed
4 years ago
1
remove backslash that is needed localy. expect it will fail but can't…
#852
TomConlin
closed
4 years ago
0
Jenkins lint find
#851
TomConlin
closed
4 years ago
0
Jenkins lint error
#850
TomConlin
closed
4 years ago
0
travis tests
#849
TomConlin
closed
4 years ago
0
HGNC filter withdrawn enteries
#847
TomConlin
closed
4 years ago
0
Move ontology declarations to summary level IRI, which is stable
#846
justaddcoffee
closed
4 years ago
0
HGNC update base URL in curie map
#845
TomConlin
closed
4 years ago
5
Update HGNC iri in curie map
#844
kshefchek
closed
4 years ago
0
Fixed failing Panther tests
#843
justaddcoffee
closed
4 years ago
1
Fix bug in _clean_up_gene_id() caused by decorator @staticmethod
#842
justaddcoffee
closed
4 years ago
0
Capture review status and "star" info from ClinVar
#841
kshefchek
closed
4 years ago
0
Rename clinvar source, make dbsnp dbxref
#840
kshefchek
closed
4 years ago
0
Several fixes for Mac:
#839
justaddcoffee
closed
4 years ago
1
Makefile tweaks
#838
TomConlin
closed
4 years ago
0
Fix phenotype.hpoa url
#837
justaddcoffee
closed
4 years ago
1
fix broken import in OMIM.py
#836
justaddcoffee
closed
4 years ago
1
Makefile refactor / clean up
#835
TomConlin
closed
4 years ago
0
Adding a curie and friends
#834
TomConlin
closed
5 years ago
0
Use obo foundry unique label in ingests of species-specific resources
#833
cmungall
opened
5 years ago
1
OMIM caching
#832
TomConlin
closed
5 years ago
0
(Don't merge) Capture review status and "star" info from ClinVar
#831
justaddcoffee
closed
4 years ago
2
small fixes
#830
TomConlin
closed
5 years ago
0
pylint Makefile tests
#829
TomConlin
closed
5 years ago
2
Modify dataset IRIs
#828
justaddcoffee
closed
5 years ago
1
Fix parse error causing MGI ingest to fail
#827
justaddcoffee
closed
5 years ago
2
Update curie_map.yaml
#826
dosumis
closed
5 years ago
0
Fix parse errors animalqtldb flybase mmrrc
#825
justaddcoffee
closed
5 years ago
6
some possibly surprising phenotype terms and some missing terms in beta Monarch data
#824
realmarcin
closed
5 years ago
5
Rename ClinVar module and update docs
#823
cmungall
closed
4 years ago
1
clinvar turtle is using incorrect xref property
#822
cmungall
closed
5 years ago
2
Update gene to OMIMPS relationship
#821
kshefchek
closed
5 years ago
0
OMIM (gene) subClassOf OMIM phenotypic series
#820
kshefchek
closed
5 years ago
0
Make clinvar variants and dbsnp ids xrefs instead of eqs
#819
kshefchek
closed
4 years ago
1
Orphanet's 'Modifying germline mutation in' mismapped to RO:0004016
#818
kshefchek
opened
5 years ago
0
Dipper should minimize downloading of ingested files from sources
#817
justaddcoffee
closed
4 years ago
7
Run omim sources serially
#816
kshefchek
closed
5 years ago
1
Comment out gene to disease parser for ctd and kegg
#815
kshefchek
closed
5 years ago
1
Remove gene to disease ingest from CTD and KEGG
#814
kshefchek
closed
5 years ago
2
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