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monarch-initiative
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dipper
Data Ingestion Pipeline for Monarch
https://dipper.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Fix key error in Reactome ingest
#914
justaddcoffee
closed
4 years ago
2
OBO url https -> http
#913
justaddcoffee
closed
4 years ago
1
Makefile error propagation and misc lint & minor refactor
#912
TomConlin
closed
4 years ago
3
FlyBase: skip derived_pheno_manifest in parsing allele phenotype association file
#911
kshefchek
closed
3 years ago
2
Flybase ingest incorrectly parses allele to phenotype lines without an anatomical or GO term
#910
kshefchek
closed
3 years ago
0
Note of obsoletion: PHENOTYPE IRIs
#909
matentzn
opened
4 years ago
3
Ingest to HPOA?
#908
drseb
opened
4 years ago
1
MGI: use Mus for unknown taxa, ClinVar: replace MedGen prefix with UMLS
#907
kshefchek
closed
4 years ago
1
mouse strains incorrectly assigned to taxon 'sequence alteration' (SO:0001059)
#906
kshefchek
closed
4 years ago
2
Fix retrieved_on subject for items retrieved from DipperCache
#905
justaddcoffee
closed
4 years ago
1
MGISlim, reduce expected "errors"
#904
TomConlin
closed
4 years ago
0
Unable to download HGNC dataset
#903
Prakash2403
closed
4 years ago
4
MGI local species translation
#902
TomConlin
closed
4 years ago
0
IMPC: refactor to reduce uninformative logging
#901
TomConlin
closed
4 years ago
0
GO rdf subjects as valid curies
#900
TomConlin
closed
4 years ago
0
Add entry in curie_map.yaml for ComplexPortal data ingested in GO
#899
justaddcoffee
closed
4 years ago
1
Add missing dct:source and pav:retrievedOn triples to Ensembl and MGI metadata
#898
justaddcoffee
closed
4 years ago
0
Learning groovy (Jekins pipeline) without a test env
#897
TomConlin
closed
4 years ago
0
Jenkins file comment char
#896
TomConlin
closed
4 years ago
0
Pipeline polish push
#895
TomConlin
closed
4 years ago
0
fix typo in Monochrom - globaltcid
#894
justaddcoffee
closed
4 years ago
0
NCBIGene (and friends)
#893
TomConlin
closed
4 years ago
0
Groovy can call the shell but it is not the shell
#892
TomConlin
closed
4 years ago
0
Jenkins ERROR log reductions
#891
TomConlin
closed
4 years ago
0
fix missing comma in taxon list
#890
TomConlin
closed
4 years ago
0
prefix 'schemaorg:' to 'schema:'
#889
TomConlin
closed
4 years ago
0
Fix metadata (dct:source and pav:retrieved_on) for files retrieved from DipperCache
#888
justaddcoffee
closed
4 years ago
3
Set created on and data release version in metadata dynamically
#887
justaddcoffee
closed
4 years ago
1
Flybase: refactor file fetching (due to missing file)
#886
TomConlin
closed
4 years ago
0
Graphviz QC scripts enhancements
#885
TomConlin
closed
4 years ago
0
remove maven round three
#884
kshefchek
closed
4 years ago
0
Jenkinsfile Clinvar path
#883
TomConlin
closed
4 years ago
0
Jenkins file learning
#882
TomConlin
closed
4 years ago
0
Panther: refactor for efficency and correctness
#881
TomConlin
closed
4 years ago
0
removing (large) files from repo
#880
TomConlin
closed
4 years ago
0
fix mis indented
#879
TomConlin
closed
4 years ago
0
initial run w/boobytrapped dipper cache
#878
TomConlin
closed
4 years ago
0
typo ; -> :
#877
TomConlin
closed
4 years ago
0
Change ensembl URL and emit error message when non-200 is received
#876
justaddcoffee
closed
4 years ago
4
Start DipperCache and Go, Wormbase & Reactome
#875
TomConlin
closed
4 years ago
4
ClinVar medgen not merging with Mondo
#874
kshefchek
closed
4 years ago
8
Minor misc clearing the decks
#873
TomConlin
closed
4 years ago
0
Missing is_allele_of associations in ZFIN ingest
#872
kshefchek
opened
4 years ago
0
Fix broken zfin url
#871
justaddcoffee
closed
4 years ago
2
Zfin 'id_map_zfin.tsv'
#870
TomConlin
closed
4 years ago
6
Question: emerging source wants to know how to best model data in RDF
#869
matentzn
closed
4 years ago
4
Unable to access HPO data repository
#868
Prakash2403
closed
4 years ago
7
Fix for OMIM ingest
#867
justaddcoffee
closed
4 years ago
4
Missing mouse genes
#866
kshefchek
opened
4 years ago
0
Fix issue constructing file path from self.files
#864
justaddcoffee
closed
4 years ago
0
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